Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009136.1 Kokia drynarioides strain JFW-HI SEQ_123840, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6240
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:2476 original size:18 final size:17

Alignment explanation


    Indices: 2446--2513  Score: 64
    Period size: 18  Copynumber: 3.8  Consensus size: 17

       2436 GCATGCACAT

                *             
       2446 CATGATCAAATGCAACCA
          1 CATGCTCAAATGCAA-CA

                    *      *  
       2464 CATGCTCAGATGCAGTCA
          1 CATGCTCAAATGCA-ACA

                  *           
       2482 CATGCTTAAATGCAGACA
          1 CATGCTCAAATGCA-ACA

                   *      
       2500 CATGCTCGAATGCA
          1 CATGCTCAAATGCA

       2514 GCCATAACAA


Statistics
Matches: 41,  Mismatches: 8, Indels: 2
        0.80            0.16        0.04

Matches are distributed among these distances:
  18   41  1.00

ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21


Consensus pattern (17 bp):   
CATGCTCAAATGCAACA

Done.