Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009147.1 Kokia drynarioides strain JFW-HI SEQ_123851, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6809
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35


Found at i:901 original size:19 final size:19

Alignment explanation


    Indices: 877--919  Score: 77
    Period size: 19  Copynumber: 2.3  Consensus size: 19

        867 AATATTTAAT

                        *      
        877 ATATAGATTATTGTAATCC
          1 ATATAGATTATTATAATCC

                               
        896 ATATAGATTATTATAATCC
          1 ATATAGATTATTATAATCC

                 
        915 ATATA
          1 ATATA

        920 TATATGTATC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  19   23  1.00

ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42


Consensus pattern (19 bp):   
ATATAGATTATTATAATCC
Done.