Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009150.1 Kokia drynarioides strain JFW-HI SEQ_123854, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4415
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37


Found at i:3084 original size:20 final size:19

Alignment explanation


    Indices: 3055--3131  Score: 55
    Period size: 20  Copynumber: 3.8  Consensus size: 19

       3045 AAATCAAGTT

                 *              
       3055 AAAATGATTTTAAACATGTC
          1 AAAATAATTTTAAACAT-TC

                      *  *   *  
       3075 AAAATAATTTGAACCAAATC
          1 AAAATAATTTTAAAC-ATTC

                 *     *        
       3095 AAAATCATTTTTAACAATTC
          1 AAAATAATTTTAAAC-ATTC

                  *          
       3115 AAAATATTTTTCAAACA
          1 AAAATAATTTT-AAACA

       3132 AGTAACTCTA


Statistics
Matches: 43,  Mismatches: 12, Indels: 4
        0.73            0.20        0.07

Matches are distributed among these distances:
  20   39  0.91
  21    4  0.09

ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34


Consensus pattern (19 bp):   
AAAATAATTTTAAACATTC
Done.