Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009156.1 Kokia drynarioides strain JFW-HI SEQ_123861, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13347
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:6447 original size:17 final size:17

Alignment explanation


    Indices: 6411--6449  Score: 53
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       6401 TTAGTTACAT

                           * 
       6411 GAAAAAGAAAAAAATGA
          1 GAAAAAGAAAAAAATAA

                              
       6428 GAAAAAGAAAGAAAA-AA
          1 GAAAAAGAAA-AAAATAA

                 
       6445 GAAAA
          1 GAAAA

       6450 GAAGAATTTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  17   16  0.80
  18    4  0.20

ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03


Consensus pattern (17 bp):   
GAAAAAGAAAAAAATAA
Done.