Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009159.1 Kokia drynarioides strain JFW-HI SEQ_123864, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4003
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34


Found at i:1020 original size:18 final size:18

Alignment explanation


    Indices: 999--1033  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        989 TCGCACAATA

                      *       
        999 ACATAACTTCGCATAAAT
          1 ACATAACTTCACATAAAT

                  *          
       1017 ACATAAGTTCACATAAA
          1 ACATAACTTCACATAAA

       1034 ATTATAGGTT


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.49, C:0.20, G:0.06, T:0.26


Consensus pattern (18 bp):   
ACATAACTTCACATAAAT

Found at i:1949 original size:65 final size:65

Alignment explanation


    Indices: 1856--1977  Score: 181
    Period size: 65  Copynumber: 1.9  Consensus size: 65

       1846 AACGCTAGGA

                              *  * *       *               *                 
       1856 AGCAATCAAATTAAAGCAGAAGGTAATTTAAGGGGACCAAAGATGAAGTTAAACCAACGTTGGAG
          1 AGCAATCAAATTAAAGCAAAAAGCAATTTAAAGGGACCAAAGATGAAATTAAACCAACGTTGGAG

                  *                                             *    
       1921 AGCAATTAAATTAAAGCAAAAAGCAATTTAAAGGGACCAAAGATGAAATTAATCCAA
          1 AGCAATCAAATTAAAGCAAAAAGCAATTTAAAGGGACCAAAGATGAAATTAAACCAA

       1978 AAGTAAAACG


Statistics
Matches: 50,  Mismatches: 7, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  65   50  1.00

ACGTcount: A:0.49, C:0.12, G:0.20, T:0.19


Consensus pattern (65 bp):   
AGCAATCAAATTAAAGCAAAAAGCAATTTAAAGGGACCAAAGATGAAATTAAACCAACGTTGGAG
Done.