Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009163.1 Kokia drynarioides strain JFW-HI SEQ_123868, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15291
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36


Found at i:13615 original size:17 final size:19

Alignment explanation


    Indices: 13566--13616  Score: 61
    Period size: 19  Copynumber: 2.8  Consensus size: 19

      13556 CCGCAGCCAC

                 *     *       
      13566 CCTACCTATATATATATAA
          1 CCTACATATATGTATATAA

                               
      13585 CCTACATATATGTATATAA
          1 CCTACATATATGTATATAA

            *              
      13604 GCTA-ATAT-TGTAT
          1 CCTACATATATGTAT

      13617 GACTTTTATT


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  17    5  0.17
  18    4  0.14
  19   20  0.69

ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39


Consensus pattern (19 bp):   
CCTACATATATGTATATAA
Done.