Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009169.1 Kokia drynarioides strain JFW-HI SEQ_123874, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2490
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.30


Found at i:1639 original size:19 final size:17

Alignment explanation


    Indices: 1611--1651  Score: 55
    Period size: 19  Copynumber: 2.3  Consensus size: 17

       1601 AATTTGAGGG

                 *             
       1611 TTAAATTAAAAAATAAAGT
          1 TTAAAGTAAAAAA-AAA-T

                             
       1630 TTAAAGTAAAAAAAAAT
          1 TTAAAGTAAAAAAAAAT

                 
       1647 TTAAA
          1 TTAAA

       1652 AACAAAAAAG


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  17    6  0.29
  18    3  0.14
  19   12  0.57

ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29


Consensus pattern (17 bp):   
TTAAAGTAAAAAAAAAT
Done.