Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009170.1 Kokia drynarioides strain JFW-HI SEQ_123875, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5616
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.37

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1088 original size:36 final size:35

Alignment explanation


    Indices: 1041--1111  Score: 117
    Period size: 36  Copynumber: 2.0  Consensus size: 35

       1031 TTTTGTTTTG

                                                
       1041 TAATATCTTGACTA-AGCAAAAAAAAAAAAAAAGCA
          1 TAATATCTTGAC-AGAGCAAAAAAAAAAAAAAAGCA

                                                
       1076 NTAATATCTTGACAGAGCAAAAAAAAAAAAAAAGCA
          1 -TAATATCTTGACAGAGCAAAAAAAAAAAAAAAGCA

       1112 CATAGATTAG


Statistics
Matches: 34,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
  35    1  0.03
  36   33  0.97

ACGTcount: A:0.62, C:0.11, G:0.10, T:0.15


Consensus pattern (35 bp):   
TAATATCTTGACAGAGCAAAAAAAAAAAAAAAGCA
Done.