Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009173.1 Kokia drynarioides strain JFW-HI SEQ_123878, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12852
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:9129 original size:23 final size:25

Alignment explanation


    Indices: 9102--9147  Score: 69
    Period size: 24  Copynumber: 1.9  Consensus size: 25

       9092 CTAATTAGGG

                                     
       9102 AATTAT-TGTTTAGA-TTTAATTCA
          1 AATTATCTGTTTAGAGTTTAATTCA

                    *              
       9125 AATTATCTTTTTAGAGTTTAATT
          1 AATTATCTGTTTAGAGTTTAATT

       9148 TGGATCTAAC


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    6  0.30
  24    7  0.35
  25    7  0.35

ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54


Consensus pattern (25 bp):   
AATTATCTGTTTAGAGTTTAATTCA

Done.