Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009174.1 Kokia drynarioides strain JFW-HI SEQ_123879, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 979

Length: 1633
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34


Found at i:612 original size:36 final size:36

Alignment explanation


    Indices: 572--672  Score: 157
    Period size: 36  Copynumber: 2.8  Consensus size: 36

        562 TTGAACATGA

                                                
        572 TGTTTAGGTGATGTCTATATTACGTGTTGAAGACGC
          1 TGTTTAGGTGATGTCTATATTACGTGTTGAAGACGC

                   *           **  *            
        608 TGTTTAGTTGATGTCTATACCACTTGTTGAAGACGC
          1 TGTTTAGGTGATGTCTATATTACGTGTTGAAGACGC

                          *              
        644 TGTTTAGGTGATGTTTATATTACGTGTTG
          1 TGTTTAGGTGATGTCTATATTACGTGTTG

        673 GCCAAACTAA


Statistics
Matches: 56,  Mismatches: 9, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  36   56  1.00

ACGTcount: A:0.21, C:0.11, G:0.26, T:0.43


Consensus pattern (36 bp):   
TGTTTAGGTGATGTCTATATTACGTGTTGAAGACGC
Done.