Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009178.1 Kokia drynarioides strain JFW-HI SEQ_123883, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2147
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34


Found at i:186 original size:16 final size:15

Alignment explanation


    Indices: 161--190  Score: 51
    Period size: 16  Copynumber: 1.9  Consensus size: 15

        151 ATCATAAATT

                           
        161 TTTTTCTTCTTTTTC
          1 TTTTTCTTCTTTTTC

                           
        176 TTTTTCTTTCTTTTT
          1 TTTTTC-TTCTTTTT

        191 ATGTGACTAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83


Consensus pattern (15 bp):   
TTTTTCTTCTTTTTC
Done.