Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009179.1 Kokia drynarioides strain JFW-HI SEQ_123884, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6705
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35


Found at i:3937 original size:102 final size:102

Alignment explanation


    Indices: 3761--3967  Score: 405
    Period size: 102  Copynumber: 2.0  Consensus size: 102

       3751 TGTCTTATGA

                                                                             
       3761 CATACAATGCCTATGGGCTTAGCACTTCGGTGCTCAGGTGTGTATTGGAGTTATGGCTGTGTTTT
          1 CATACAATGCCTATGGGCTTAGCACTTCGGTGCTCAGGTGTGTATTGGAGTTATGGCTGTGTTTT

                                                 
       3826 GTAGTTACTCGCGTATCCGTATTTGTTTGTTATAGTT
         66 GTAGTTACTCGCGTATCCGTATTTGTTTGTTATAGTT

                                                                    *        
       3863 CATACAATGCCTATGGGCTTAGCACTTCGGTGCTCAGGTGTGTATTGGAGTTATGGTTGTGTTTT
          1 CATACAATGCCTATGGGCTTAGCACTTCGGTGCTCAGGTGTGTATTGGAGTTATGGCTGTGTTTT

                                                 
       3928 GTAGTTACTCGCGTATCCGTATTTGTTTGTTATAGTT
         66 GTAGTTACTCGCGTATCCGTATTTGTTTGTTATAGTT

               
       3965 CAT
          1 CAT

       3968 CAAGTTAAAT


Statistics
Matches: 104,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 102  104  1.00

ACGTcount: A:0.17, C:0.15, G:0.26, T:0.42


Consensus pattern (102 bp):   
CATACAATGCCTATGGGCTTAGCACTTCGGTGCTCAGGTGTGTATTGGAGTTATGGCTGTGTTTT
GTAGTTACTCGCGTATCCGTATTTGTTTGTTATAGTT
Done.