Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009188.1 Kokia drynarioides strain JFW-HI SEQ_123893, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5174
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:4905 original size:17 final size:17

Alignment explanation


    Indices: 4880--4923  Score: 70
    Period size: 17  Copynumber: 2.6  Consensus size: 17

       4870 CCGACAGACT

                             
       4880 TTAAATTTATTTTAAAA
          1 TTAAATTTATTTTAAAA

                *           *
       4897 TTAAGTTTATTTTAAAT
          1 TTAAATTTATTTTAAAA

                      
       4914 TTAAATTTAT
          1 TTAAATTTAT

       4924 CATAGATTTG


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   24  1.00

ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57


Consensus pattern (17 bp):   
TTAAATTTATTTTAAAA
Done.