genome.fa.s9197.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009197.1 Kokia drynarioides strain JFW-HI SEQ_123902, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84157

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2343--2425	24	3.2	24	67	23	69	43	6	19	31	1.75
2314--2430	54	2.2	54	98	0	225	43	5	20	29	1.75
2314--2403	30	3.2	29	66	24	84	43	5	22	28	1.75
7095--7170	40	1.9	40	86	0	107	28	10	10	50	1.70
7174--7346	84	2.1	85	88	2	260	23	11	10	54	1.67
7173--7355	83	2.2	82	85	3	249	24	11	9	54	1.66
8014--8234	40	5.4	38	68	20	140	40	8	0	51	1.33
7989--8220	49	5.4	44	73	15	193	41	8	0	50	1.32
8050--8214	80	2.0	82	88	4	246	39	9	0	51	1.34
8056--8219	40	4.1	40	77	10	163	39	9	0	51	1.34
8188--8362	94	1.9	93	85	4	228	37	12	3	46	1.58
11068--11103	18	2.0	18	100	0	72	0	27	44	27	1.55
11937--11969	14	2.4	14	90	5	50	27	6	0	66	1.15
12029--12168	28	4.8	27	66	26	81	34	8	2	54	1.46
12016--12176	61	2.7	59	87	10	215	36	8	3	51	1.49
17048--17177	56	2.3	57	81	5	156	50	6	17	26	1.70
22356--22425	34	2.1	34	94	0	122	41	17	5	35	1.73
23946--23988	22	2.0	22	85	0	59	65	2	25	6	1.30
38006--38108	50	2.1	50	100	0	206	52	9	7	30	1.62
41966--42061	48	2.0	48	97	0	183	32	10	26	31	1.90
44414--44624	105	2.0	105	97	0	395	19	16	11	52	1.74
45885--46235	60	5.8	60	88	4	510	31	11	19	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62180--62334	65	2.4	62	81	9	175	60	13	19	7	1.56
63176--63228	16	3.2	16	78	19	56	81	0	13	5	0.86
63192--63252	27	2.3	27	83	16	83	78	0	16	4	0.91
63178--63229	17	2.9	17	78	16	61	80	0	13	5	0.88
63192--63250	25	2.2	26	88	8	84	79	0	15	5	0.89
65352--65556	78	2.6	78	81	6	227	24	28	15	31	1.95
65356--65537	26	7.0	26	79	3	197	23	29	15	31	1.96
66717--67695	49	20.1	49	82	5	921	36	14	27	21	1.92
66751--67811	49	21.8	49	81	6	503	36	14	27	21	1.92
72580--72613	12	3.0	12	91	8	54	8	20	0	70	1.13
75217--75266	18	2.8	18	85	11	75	42	12	12	34	1.79
75693--75870	72	2.5	72	94	0	311	23	5	14	56	1.60
76867--76893	6	4.5	6	100	0	54	48	0	51	0	1.00

Tables:   1

The End!