Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009203.1 Kokia drynarioides strain JFW-HI SEQ_123908, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2932
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.36


Found at i:1784 original size:30 final size:30

Alignment explanation


    Indices: 1748--1821  Score: 121
    Period size: 30  Copynumber: 2.5  Consensus size: 30

       1738 CTTCTTCGCA

                                     *    
       1748 ACACCAGCCTATCTTCTCCGCAACATCATC
          1 ACACCAGCCTATCTTCTCCGCAACACCATC

                                 *        
       1778 ACACCAGCCTATCTTCTCCGCCACACCATC
          1 ACACCAGCCTATCTTCTCCGCAACACCATC

              *           
       1808 ACGCCAGCCTATCT
          1 ACACCAGCCTATCT

       1822 AAAAGCGATG


Statistics
Matches: 41,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  30   41  1.00

ACGTcount: A:0.24, C:0.46, G:0.08, T:0.22


Consensus pattern (30 bp):   
ACACCAGCCTATCTTCTCCGCAACACCATC
Done.