Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009212.1 Kokia drynarioides strain JFW-HI SEQ_123917, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3211
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Found at i:417 original size:216 final size:216
Alignment explanation
Indices: 26--2633 Score: 2902
Period size: 216 Copynumber: 12.1 Consensus size: 216
16 GATTTTTATT
* * * * * *
26 CTCGGGAAATCACATCATTTGGTCAAAATTGTTTGTCATTTTGTAAACAGGATTTGGTCTTTGAA
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
* *
91 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTGT-TTGGACGAACTTTCGAACTTGTC
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGATGAACTTTCGAACTTGTC
* * * *
155 AAACTTTTACGAGTTCTTTTATAGCTTTGGTTCCTTAAAGTATTCAAGACGATCCACTCCTTCGA
130 AAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * *
220 GCAGTTTTTCAAACATTCCATA
195 GCAATTTTTCGAACATTCCATG
* *
242 CTCGGAAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGGTCTTTGAA
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
* * * * * * * **
307 TTAAAAACTTATTTACATGAGAATTGTTTCTATCATGGATCTTTGATGAACTTCCAAACTTGAAA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCA
* * * * **
372 AACTTTTACGAGTTCTTTTATAACTTTGTTTCCATAAACTATTCAAGATTATCCATTCCTTCGAG
131 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* *
437 CAATTTTCCGAACATTCCACG
196 CAATTTTTCGAACATTCCATG
* **
458 CTC-GAGAAATCGCATCATCTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
1 CTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGA
* * ** * * *
522 ATTAAAAGCTTATTTATGTGAGAATTGTTAATCTATTGGTTTTTGGATAAACTTTCGAACTTGTC
65 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTC
* * * *
587 AAACTTCTACGAGTTCTTTTATAACTTC-AGTTCGTTACAGTATTCAAGACGATCCATTCCTTCT
130 AAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* * * *
651 AGCCACTTTCCAAACATTCCATG
194 AGCAATTTTTCGAACATTCCATG
* * * * * **
674 CTCGGGAAATCGCATCATTTGGTTTGAACAGTTTGTCATTTTTTAAAC---TTTTGGTCTTTGTC
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
* * * *
736 TTAAAAACTTATTTACGTGAGAGTTGATTCTCTTTTGGTTCTTGGATGAACTTCCGAACTTGTCA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCA
* * * * * *
801 AGCATTTATGAGTTATTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAG
131 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* *
866 GAATTTTTCGAGCATTCCATG
196 CAATTTTTCGAACATTCCATG
* * * ** * * *
887 CTCGGGAAAA-CGCATCATTTGGTCGAAACAGTGTACCATTTTGTAAA-TTAGATTAGGTCTTTG
1 CTC-GGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAT-GTTTTGGTCTTTG
* * * * *
950 AATTAAAAACTTGTTTACGGGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTTCAAACTTGT
64 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGT
* * * * *
1015 CAAACTTCTACGAGTTCCTTTATAACTTCGAATCCTTAAAGTATTCAAGACGATCCTTTCCTTCA
129 CAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
*
1080 AGCAGTTTTTCGAACATTCCATG
194 AGCAATTTTTCGAACATTCCATG
* * * * * * * **
1103 GTCGGGAAATTGCTTCATCTAGTCTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAA
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
* * *
1168 TTAAAAACTTATTTACGTGAGAATT-TTT-TCTCTTTGTTTTTTGATGAACTTTCGAACTTGTCA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCA
* * * * * * * *
1231 AACTTTTACGAG-TCTTTTATAACTTTGGTTCGTTACACTTTTCAAGGCGATCCATTCCTTCAAG
131 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
*
1295 CAATTTTTCGGACATTCCATG
196 CAATTTTTCGAACATTCCATG
* * * *
1316 CTC-GAGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGTTAAC---TTTTGGTTTTTGA
1 CTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGA
* * * *
1377 ATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTATTGTTTCTTGGATGAAC-TTCTAAACTTGT
65 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTC-GAACTTGT
* * *
1441 CAAACATTTATGAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
129 CAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* * * *
1506 AGCAAGTTTCCGAACATTCCCTA
194 AGCAATTTTTCGAACATTCCATG
* * * * * *
1529 CTTGGGAAAGT-GCATCATTTAGG-CTAAGTAGTTTGCCATTTTGTAAAC-TAGATTAGGTCTTT
1 C-TCGGAAAATCGCATCATTT-GGTCTAAATAGTTTGTCATTTTGTAAACAT-GTTTTGGTCTTT
* * * * *
1591 GAATTAAAAACTTGTTTACGCGAAAATTGTTTCTATCTTGGTTCTTGGACGAACTTTCGAACTTG
63 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTG
* * * * * * *
1656 TCAAACTTCTACCAGTTCCTTTATAGCTTCGATACCTTAAAGTATTCAAGACGATCCTTTCGTTC
128 TCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * *
1721 GAGTAGTTTTTCGATCATTCCAAG
193 GAGCAATTTTTCGAACATTCCATG
* ** * * * * *
1745 CTCAGAATTTCGTATCATTTTGTCTAAGTAGTATT-TCATTTTGTAAACAAGTTTTGGTCTTTAA
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGT-TTGTCATTTTGTAAACATGTTTTGGTCTTTGA
* * *
1809 ATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTGT-TTGGAGGAACTTCCGAACTTGT
65 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGATGAACTTTCGAACTTGT
* * * * *
1873 CAAACTTTTAC-ACGTTCTTTTATAACTTCGGTTCCTCAAAGTATTCTAGATGAT-CATTTCTTC
129 CAAACTTTTACGA-GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * *
1936 GAGAAAATTGTCGAACATTCCTTG
193 GAGCAATTTTTCGAACATTCCATG
* * * * ** **
1960 -T-GAAAAATTGCATCATATGGTCTAAATAGTTTGACATTTTGTAAACAACTTTTGGTCTTACAA
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
* * * * * ** *
2023 TTAAAAACTTATTTACATGCGATTTGTTTC-C-CTCGGTTCTTGGACGAACTTTCGAACTCATAA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCA
* *
2086 AACTTTTACGAGTTCTTTTGTAACTTCGATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAG
131 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
2151 AAATTTTCCTAACATTCTATG
196 CAATTTTTCGAACATTCCATG
* * * * *
2172 CTCGGGAAATCACATCATTTGGTCTAAATAGTTGGTCATTTTGTAAACATATTTTGGTCTTTAAA
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
* *
2237 TTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAGCTTGTCA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCA
* * *
2302 AACTTTTACAAGTTATTTTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
131 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* ** *
2367 TAATTTCCCAAACATTCCATG
196 CAATTTTTCGAACATTCCATG
* * *
2388 CTCGGGAAATCGCATCATTTGTTCTAAATAGTTTGTC-TTTTCGTAAACAAGTTGTTTT-TTCTT
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-GTAAAC-A--TGTTTTGGTCTT
*
2451 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTTGAACTT
62 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTT
***
2516 GTCAAACTTTT-CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATATGTTCCTT
127 GTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTT
*
2580 TGAG-ATATTTTTCGAACATTCCATG
192 CGAGCA-ATTTTTCGAACATTCCATG
* * *
2605 CTCGGGAAATCACATCATTTGGTCAAAAT
1 CTCGGAAAATCGCATCATTTGGTCTAAAT
2634 TGATGCGAGC
Statistics
Matches: 1987, Mismatches: 362, Indels: 85
0.82 0.15 0.03
Matches are distributed among these distances:
210 38 0.02
211 74 0.04
212 66 0.03
213 430 0.22
214 129 0.06
215 48 0.02
216 1021 0.51
217 100 0.05
218 76 0.04
219 5 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (216 bp):
CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCA
AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
CAATTTTTCGAACATTCCATG
Found at i:1546 original size:642 final size:644
Alignment explanation
Indices: 26--2628 Score: 2992
Period size: 645 Copynumber: 4.0 Consensus size: 644
16 GATTTTTATT
* ** * *
26 CTCGGGAAATCACATCATTTGGTCAAAATTGTTTGTCATTTTGTAAACAGGATTTGGTCTTTGAA
1 CTCGGGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGTTAAC---TTTTGGTCTTTGAA
*
91 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTGT-TTGGACGAACTTTCGAACTTGTC
63 TTAAAAACTTATTTACGTGAGAGTTGTTTCTCTATTGGT-TCTTGGACGAACTTTCGAACTTGTC
* * * * * *
155 AAACTTTTACGAGTTCTTTTATAGCTTTGGTTCCTTAAAGTATTCAAGACGATCCACTCCTTCGA
127 AAACATTTACGAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * *
220 GC-AGTTTTTCAAACATTCCATACTC-GGAAAATCACATCATTTGGTCTAAATAGTTTTTCATTT
192 GCAAG-TTTCCGAACATTCCATACTCGGGAAAATCACATCATTTGGTCTAAATAG-TGTCCATTT
* * * * * *
283 TGTAAACATGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTATCATGGATC
255 TGTAAATA-GATTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTC
* * * ** * * * ** * *
348 TTTGATGAACTTCCAAACTTGAAAAACTTTTACGAGTTCTTTTATAACTTTGTTTCCATAAACTA
319 TTGGACGAACTTTCAAACTTGTCAAACTTCTACGAGTTCCTTTATAACTTCGAATCCTTAAAGTA
** *
413 TTCAAGATTATCCATTCCTTCGAGCAATTTTCCGAACATTCCACGCTCGAGAAATCGCATCATCT
384 TTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATCT
* * *
478 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAGCTTATTTATGTGA
449 TGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
** * * *
543 GAATTGTTAATCTATTGGTTTTTGGATAAACTTTCGAACTTGTCAAACTTCTACGAGTTCTTTTA
514 GAATTGTTTCTCTCTTGGTTTTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTA
* * * * * * * *
608 TAACTTCAGTTCGTTACAGTATTCAAGACGATCCATTCCTTCTAGCCACTTTCCAAACATTCCAT
579 TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAT
673 G
644 G
* * * **
674 CTCGGGAAATCGCATCATTTGGTTTGAACAGTTTGTCATTTT-TTAAACTTTTGGTCTTTGTCTT
1 CTCGGGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGTT-AACTTTTGGTCTTTGAATT
* * * * *
738 AAAAACTTATTTACGTGAGAGTTGATTCTCTTTTGGTTCTTGGATGAACTTCCGAACTTGTCAAG
65 AAAAACTTATTTACGTGAGAGTTGTTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
803 CATTTATGAGTT-ATTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGG
130 CATTTACGAGTTCA-TTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * *
867 AATTTTTCGAGCATTCCATGCTCGGGAAAA-CGCATCATTTGGTCGAAACAGTGTACCATTTTGT
194 AAGTTTCCGAACATTCCATACTCGGGAAAATCACATCATTTGGTCTAAATAGTGT-CCATTTTGT
* *
931 AAATTAGATTAGGTCTTTGAATTAAAAACTTGTTTACGGGAGAATTGTTTCTATCTTGGTTCTTG
258 AAA-TAGATTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTG
996 GACGAACTTTCAAACTTGTCAAACTTCTACGAGTTCCTTTATAACTTCGAATCCTTAAAGTATTC
322 GACGAACTTTCAAACTTGTCAAACTTCTACGAGTTCCTTTATAACTTCGAATCCTTAAAGTATTC
* * * * * * * * *
1061 AAGACGATCCTTTCCTTCAAGCAGTTTTTCGAACATTCCATGGTCGGGAAATTGCTTCATCTAGT
387 AAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATCTTGT
*
1126 CTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
452 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* *
1191 TT-TTT-TCTCTTTGTTTTTTGATGAACTTTCGAACTTGTCAAACTTTTACGAG-TCTTTTATAA
517 TTGTTTCTCTCTTGGTTTTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * * * * *
1253 CTTTGGTTCGTTACACTTTTCAAGGCGATCCATTCCTTCAAGCAATTTTTCGGACATTCCATG
582 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
* *
1316 CTCGAGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGTTAACTTTTGGTTTTTGAATTA
1 CTCGGGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGTTAACTTTTGGTCTTTGAATTA
* * *
1381 AAAACTTATTTACGTGAGAGTTGTTTCTCTATTGTTTCTTGGATGAAC-TTCTAAACTTGTCAAA
66 AAAACTTATTTACGTGAGAGTTGTTTCTCTATTGGTTCTTGGACGAACTTTC-GAACTTGTCAAA
*
1445 CATTTATGAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
130 CATTTACGAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * *
1510 AGTTTCCGAACATTCCCTACTTGGGAAAGT-GCATCATTTAGG-CTAAGTAGTTTGCCATTTTGT
195 AGTTTCCGAACATTCCATACTCGGGAAAATCACATCATTT-GGTCTAAATAGTGT-CCATTTTGT
* * *
1573 AAACTAGATTAGGTCTTTGAATTAAAAACTTGTTTACGCGAAAATTGTTTCTATCTTGGTTCTTG
258 AAA-TAGATTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTG
* * *
1638 GACGAACTTTCGAACTTGTCAAACTTCTACCAGTTCCTTTATAGCTTCG-ATACCTTAAAGTATT
322 GACGAACTTTCAAACTTGTCAAACTTCTACGAGTTCCTTTATAACTTCGAAT-CCTTAAAGTATT
* * * * * * * * * *
1702 CAAGACGATCCTTTCGTTCGAGTAGTTTTTCGATCATTCCAAGCTC-AGAATTTCGTATCATTTT
386 CAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAA-ATCGCATCATCTT
* * * *
1766 GTCTAAGTAGTATT-TCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACATGA
450 GTCTAAATAGT-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * *
1830 GAATTGTTTCTCTCTTGGTGTTTGGAGGAACTTCCGAACTTGTCAAACTTTTAC-ACGTTCTTTT
514 GAATTGTTTCTCTCTTGGTTTTTGGATGAACTTTCGAACTTGTCAAACTTTTACGA-GTTCTTTT
* * * * * * * *
1894 ATAACTTCGGTTCCTCAAAGTATTCTAGATGAT-CATTTCTTCGAGAAAATTGTCGAACATTCCT
578 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCA
1958 TG
643 TG
** ** * * * * **
1960 -T-GAAAAATTGCATCATATGGTCTAAATAGTTTGACATTTTGTAAACAACTTTTGGTCTTACAA
1 CTCGGGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGT---TAACTTTTGGTCTTTGAA
* * * * * ** *
2023 TTAAAAACTTATTTACATGCGATTTGTTTC-C-CTCGGTTCTTGGACGAACTTTCGAACTCATAA
63 TTAAAAACTTATTTACGTGAGAGTTGTTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * * *
2086 AACTTTTACGAGTTCTTTTGTAACTTCGATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAG
128 AACATTTACGAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
2151 AAATTTTCCTAACATTCTATGCTCGGG-AAATCACATCATTTGGTCTAAATAGTTGGT-CATTTT
193 CAAGTTTCCGAACATTCCATACTCGGGAAAATCACATCATTTGGTCTAAATAG-T-GTCCATTTT
* * * * * *
2214 GTAAACATATTTTGGTCTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCT
256 GTAAATAGA-TTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCT
* * * * * ** * *
2279 TGGATGAACTTTCGAGCTTGTCAAACTTTTACAAGTTATTTTATAACTTTGATTCCTTAAAGTAT
320 TGGACGAACTTTCAAACTTGTCAAACTTCTACGAGTTCCTTTATAACTTCGAATCCTTAAAGTAT
* * * *
2344 TCAAGACGATCCATTCCTTCGAGTAATTTCCCAAACATTCCATGCTCGGGAAATCGCATCAT-TT
385 TCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATCTT
* **
2408 GTTCTAAATAGTTTGTC-TTTTCGTAAACAAGTTGTTTTTTCTTTGAATTAAAAACTTATTTACG
450 G-TCTAAATAGTTTGTCATTTT-GTAAACAA-CT-TTTGGTCTTTGAATTAAAAACTTATTTACG
* *
2472 TGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTTGAACTTGTCAAACTTTT-CGAGTTCTT
511 TGAGAATTGTTTCTCTCTTGGTTTTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
* *** *
2536 TTATAACTTCGATTCCTTAAAGTATTCAAGACGATATGTTCCTTTGAG-ATATTTTTCGAACATT
576 TTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA-ATTTTTCGAACATT
2600 CCATG
640 CCATG
2605 CTCGGGAAATCACATCATTTGGTC
1 CTCGGGAAATCACATCATTTGGTC
2629 AAAATTGATG
Statistics
Matches: 1664, Mismatches: 251, Indels: 81
0.83 0.13 0.04
Matches are distributed among these distances:
641 7 0.00
642 558 0.34
643 348 0.21
644 120 0.07
645 566 0.34
646 9 0.01
647 17 0.01
648 39 0.02
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (644 bp):
CTCGGGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGTTAACTTTTGGTCTTTGAATTA
AAAACTTATTTACGTGAGAGTTGTTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
ATTTACGAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
GTTTCCGAACATTCCATACTCGGGAAAATCACATCATTTGGTCTAAATAGTGTCCATTTTGTAAA
TAGATTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACG
AACTTTCAAACTTGTCAAACTTCTACGAGTTCCTTTATAACTTCGAATCCTTAAAGTATTCAAGA
CGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATCTTGTCTAA
ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
TTCTCTCTTGGTTTTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
Done.