Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009213.1 Kokia drynarioides strain JFW-HI SEQ_123918, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3211
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Found at i:417 original size:216 final size:216
Alignment explanation
Indices: 26--2633 Score: 2905
Period size: 216 Copynumber: 12.1 Consensus size: 216
16 GATTTTTATT
* * * * * *
26 CTCGGGAAATCACATCATTTGGTCAAAATTGTTTGTCATTTTGTAAACAGGATTTGGTCTTTGAA
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
*
91 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTGT-TTGGACGAACTTTCGAACTTGTC
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGACGAACTTTCGAACTTGTC
* * *
155 AAACTTTTACGAGTTCTTTTATAGCTTTGGTTCCTTAAAGTATTCAAGACGATCCACTCCTTCGA
130 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * *
220 GCAGTTTTTCAAACATTCCATA
195 GCAATTTTTCGAACATTCCATG
* *
242 CTCGGAAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGGTCTTTGAA
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
* * * * * * * * **
307 TTAAAAACTTATTTACATGAGAATTGTTTCTATCATGGATCTTTGATGAACTTCCAAACTTGAAA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * * * **
372 AACTTTTACGAGTTCTTTTATAACTTTGTTTCCATAAACTATTCAAGATTATCCATTCCTTCGAG
131 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* *
437 CAATTTTCCGAACATTCCACG
196 CAATTTTTCGAACATTCCATG
* **
458 CTC-GAGAAATCGCATCATCTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGA
1 CTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGA
* * ** * * **
522 ATTAAAAGCTTATTTATGTGAGAATTGTTAATCTATTGGTTTTTGGATAAACTTTCGAACTTGTC
65 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * *
587 AAACTTCTACGAGTTCTTTTATAACTTCAGTTCGTTACAGTATTCAAGACGATCCATTCCTTCTA
130 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * *
652 GCCACTTTCCAAACATTCCATG
195 GCAATTTTTCGAACATTCCATG
* * * * * **
674 CTCGGGAAATCGCATCATTTGGTTTGAACAGTTTGTCATTTTTTAAAC---TTTTGGTCTTTGTC
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
* * * * *
736 TTAAAAACTTATTTACGTGAGAGTTGATTCTCTTTTGGTTCTTGGATGAACTTCCGAACTTGTCA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * * * *
801 AGCATTTATGAGTTATTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAG
131 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* *
866 GAATTTTTCGAGCATTCCATG
196 CAATTTTTCGAACATTCCATG
* * * ** * * *
887 CTCGGGAAAA-CGCATCATTTGGTCGAAACAGTGTACCATTTTGTAAA-TTAGATTAGGTCTTTG
1 CTC-GGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAT-GTTTTGGTCTTTG
* * * *
950 AATTAAAAACTTGTTTACGGGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTTCAAACTTGT
64 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
* * ** * *
1015 CAAACTTCTACGAGTTCCTTTATAACTTCGAATCCTTAAAGTATTCAAGACGATCCTTTCCTTCA
129 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
*
1080 AGCAGTTTTTCGAACATTCCATG
194 AGCAATTTTTCGAACATTCCATG
* * * * * * * **
1103 GTCGGGAAATTGCTTCATCTAGTCTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAA
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
* * * *
1168 TTAAAAACTTATTTACGTGAGAATT-TTT-TCTCTTTGTTTTTTGATGAACTTTCGAACTTGTCA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * * * * * *
1231 AACTTTTACGAG-TCTTTTATAACTTTGGTTCGTTACACTTTTCAAGGCGATCCATTCCTTCAAG
131 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
*
1295 CAATTTTTCGGACATTCCATG
196 CAATTTTTCGAACATTCCATG
* * * *
1316 CTC-GAGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGTTAAC---TTTTGGTTTTTGA
1 CTCGGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGA
* * * * *
1377 ATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTATTGTTTCTTGGATGAAC-TTCTAAACTTGT
65 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGT
* * * *
1441 CAAACATTTATGAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
129 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* * *
1506 AGCAATTTTCCGAACATTCCCTA
194 AGCAATTTTTCGAACATTCCATG
* * * * * *
1529 CTTGGGAAAGT-GCATCATTTGGGCTAAGTAGTTTGTCATTTTGTAAAC-TAGATTAGGTCTTTG
1 C-TCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAT-GTTTTGGTCTTTG
* * *
1592 AATTAAAAACTTGTTTACGCGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTTCGAACTTGT
64 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
* * * ** * * * *
1657 CAAACTTCTACCAGTTCCTTTATAGTTTCGGTACCTTAAAGTATTCAAGACGATACTTTCGTTCG
129 CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* * *
1722 AGTAGTTTTTCGAACATTCCAAG
194 AGCAATTTTTCGAACATTCCATG
* ** * * * * *
1745 CTCAGAATTTCGTATCATTTTGTCTAAGTAGTATT-TCATTTTGTAAACAAGTTTTGGTCTTTAA
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGT-TTGTCATTTTGTAAACATGTTTTGGTCTTTGA
* * *
1809 ATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTGT-TTGGAGGAACTTCCGAACTTGT
65 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGACGAACTTTCGAACTTGT
* * * *
1873 CAAACTTTTAC-ACGTTCTTTTATAACTTCGGTTCCTCAAAGTATTCTAGATGAT-CATTTCTTC
129 CAAACTTTTACGA-GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * *
1936 GAGAAAATTGTCGAACATTCCTTG
193 GAGCAATTTTTCGAACATTCCATG
* * * ** **
1960 -T-GAAAAATTGCATCATTTGGTCTAAATAGTTTGACATTTTGTAAACAACTTTTGGTCTTACAA
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
* * * * ** *
2023 TTAAAAACTTATTTACATGCGATTTGTTTC-C-CTCGGTTCTTGGACGAACTTTCGAACTCATAA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* *
2086 AACTTTTACGAGTTCTTTTGTAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAG
131 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
2151 AAATTTTCCTAACATTCTATG
196 CAATTTTTCGAACATTCCATG
* * ** *
2172 CTCGGAAAATCACATCATTTGGTCTAAATAGTTGGTCATTTTGTAAACATACTTTGGTCTTTAAA
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
* * *
2237 ATAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAGCTTGTCA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * ***
2302 AACTTTTACAAGTTATTTTATAACTTTTATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
131 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* ** *
2367 TAATTTCCCAAACATTCCATG
196 CAATTTTTCGAACATTCCATG
* * * * **
2388 CTCGGGAAATCACATCATTTGTTCTAAATAGTTTGTC-TTTTCGTAAACAAGTTTTTTTTTCTTT
1 CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-GTAAAC-A-TGTTTTGGTCTTT
*
2452 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTG
63 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTG
* * * * * *
2517 TCAAACTTTT-CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATCCAAGATGATACGTTCCTTT
128 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
2581 GAG-ATATTTTTCGAACATTCCATG
193 GAGCA-ATTTTTCGAACATTCCATG
* *
2605 CTCGGAAAATCACATCATTTGGTCAAAAT
1 CTCGGAAAATCGCATCATTTGGTCTAAAT
2634 TGATGCGAGC
Statistics
Matches: 1990, Mismatches: 364, Indels: 75
0.82 0.15 0.03
Matches are distributed among these distances:
210 38 0.02
211 75 0.04
212 66 0.03
213 436 0.22
214 127 0.06
215 48 0.02
216 1023 0.51
217 98 0.05
218 79 0.04
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (216 bp):
CTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGGTCTTTGAA
TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
CAATTTTTCGAACATTCCATG
Found at i:1546 original size:642 final size:643
Alignment explanation
Indices: 26--2628 Score: 3000
Period size: 645 Copynumber: 4.0 Consensus size: 643
16 GATTTTTATT
* * ** * *
26 CTCGGGAAATCACATCATTTGGTCAAAATTGTTTGTCATTTTGTAAACAGGATTTGGTCTTTGAA
1 CTCGAGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGTTAAC---TTTTGGTCTTTGAA
*
91 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTGT-TTGGACGAACTTTCGAACTTGTC
63 TTAAAAACTTATTTACGTGAGAGTTGTTTCTCTATTGGT-TCTTGGACGAACTTTCGAACTTGTC
* * * * *
155 AAACTTTTACGAGTTCTTTTATAGCTTTGGTTCCTTAAAGTATTCAAGACGATCCACTCCTTCGA
127 AAACATTTACGAGTTCATTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * *
220 GCAGTTTTTCAAACATTCCATACTCGGAAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTG
192 GCAATTTTCCGAACATTCCATACTCGGAAAATCACATCATTTGGTCTAAATAG-TGTTCATTTTG
* * * * * *
285 TAAACATGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTATCATGGATCTT
256 TAAATA-GATTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTT
* * * ** * * * * * *
350 TGATGAACTTCCAAACTTGAAAAACTTTTACGAGTTCTTTTATAACTTTGTTTCCATAAACTATT
320 GGACGAACTTTCAAACTTGTCAAACTTCTACGAGTTCCTTTATAACTTCGATTCCTTAAAGTATT
** * *
415 CAAGATTATCCATTCCTTCGAGCAATTTTCCGAACATTCCACGCTCGAGAAATCGCATCATCTGG
385 CAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATCTTG
* *
480 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAGCTTATTTATGTGAGA
450 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
** * * *
545 ATTGTTAATCTATTGGTTTTTGGATAAACTTTCGAACTTGTCAAACTTCTACGAGTTCTTTTATA
515 ATTGTTTCTCTCTTGGTTTTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
* * * * * * * *
610 ACTTCAGTTCGTTACAGTATTCAAGACGATCCATTCCTTCTAGCCACTTTCCAAACATTCCATG
580 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
* * * * **
674 CTCGGGAAATCGCATCATTTGGTTTGAACAGTTTGTCATTTT-TTAAACTTTTGGTCTTTGTCTT
1 CTCGAGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGTT-AACTTTTGGTCTTTGAATT
* * * * *
738 AAAAACTTATTTACGTGAGAGTTGATTCTCTTTTGGTTCTTGGATGAACTTCCGAACTTGTCAAG
65 AAAAACTTATTTACGTGAGAGTTGTTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
803 CATTTATGAGTT-ATTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTCGAGG
130 CATTTACGAGTTCA-TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * * *
867 AATTTTTCGAGCATTCCATGCTCGGGAAAA-CGCATCATTTGGTCGAAACAGTGTACCATTTTGT
194 AATTTTCCGAACATTCCATACTC-GGAAAATCACATCATTTGGTCTAAATAGTGT-TCATTTTGT
* *
931 AAATTAGATTAGGTCTTTGAATTAAAAACTTGTTTACGGGAGAATTGTTTCTATCTTGGTTCTTG
257 AAA-TAGATTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTG
*
996 GACGAACTTTCAAACTTGTCAAACTTCTACGAGTTCCTTTATAACTTCGAATCCTTAAAGTATTC
321 GACGAACTTTCAAACTTGTCAAACTTCTACGAGTTCCTTTATAACTTCGATTCCTTAAAGTATTC
* * * * * * * * *
1061 AAGACGATCCTTTCCTTCAAGCAGTTTTTCGAACATTCCATGGTCGGGAAATTGCTTCATCTAGT
386 AAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATCTTGT
*
1126 CTAAATAGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
451 CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA
* *
1191 TT-TTT-TCTCTTTGTTTTTTGATGAACTTTCGAACTTGTCAAACTTTTACGAG-TCTTTTATAA
516 TTGTTTCTCTCTTGGTTTTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * * * * *
1253 CTTTGGTTCGTTACACTTTTCAAGGCGATCCATTCCTTCAAGCAATTTTTCGGACATTCCATG
581 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
*
1316 CTCGAGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGTTAACTTTTGGTTTTTGAATTA
1 CTCGAGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGTTAACTTTTGGTCTTTGAATTA
* * *
1381 AAAACTTATTTACGTGAGAGTTGTTTCTCTATTGTTTCTTGGATGAAC-TTCTAAACTTGTCAAA
66 AAAACTTATTTACGTGAGAGTTGTTTCTCTATTGGTTCTTGGACGAACTTTC-GAACTTGTCAAA
* *
1445 CATTTATGAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
130 CATTTACGAGTTCATTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * * *
1510 ATTTTCCGAACATTCCCTACTTGGGAAAGT-GCATCATTTGGGCTAAGTAGTTTGTCATTTTGTA
195 ATTTTCCGAACATTCCATAC-TCGGAAAATCACATCATTTGGTCTAAATAGTGT-TCATTTTGTA
* *
1574 AACTAGATTAGGTCTTTGAATTAAAAACTTGTTTACGCGAGAATTGTTTCTATCTTGGTTCTTGG
258 AA-TAGATTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGG
* * ** * *
1639 ACGAACTTTCGAACTTGTCAAACTTCTACCAGTTCCTTTATAGTTTCGGTACCTTAAAGTATTCA
322 ACGAACTTTCAAACTTGTCAAACTTCTACGAGTTCCTTTATAACTTCGATTCCTTAAAGTATTCA
* * * * * * * * * *
1704 AGACGATACTTTCGTTCGAGTAGTTTTTCGAACATTCCAAGCTC-AGAATTTCGTATCATTTTGT
387 AGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAA-ATCGCATCATCTTGT
* * * *
1768 CTAAGTAGTATT-TCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGA
451 CTAAATAGT-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * *
1832 ATTGTTTCTCTCTTGGTGTTTGGAGGAACTTCCGAACTTGTCAAACTTTTAC-ACGTTCTTTTAT
515 ATTGTTTCTCTCTTGGTTTTTGGATGAACTTTCGAACTTGTCAAACTTTTACGA-GTTCTTTTAT
* * * * * * * *
1896 AACTTCGGTTCCTCAAAGTATTCTAGATGAT-CATTTCTTCGAGAAAATTGTCGAACATTCCTTG
579 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
* ** * * * **
1960 -T-GAAAAATTGCATCATTTGGTCTAAATAGTTTGACATTTTGTAAACAACTTTTGGTCTTACAA
1 CTCGAGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGT---TAACTTTTGGTCTTTGAA
* * * * * ** *
2023 TTAAAAACTTATTTACATGCGATTTGTTTC-C-CTCGGTTCTTGGACGAACTTTCGAACTCATAA
63 TTAAAAACTTATTTACGTGAGAGTTGTTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * * *
2086 AACTTTTACGAGTTCTTTTGTAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAG
128 AACATTTACGAGTTCATTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
2151 AAATTTTCCTAACATTCTATGCTCGGAAAATCACATCATTTGGTCTAAATAGTTGGTCATTTTGT
193 CAATTTTCCGAACATTCCATACTCGGAAAATCACATCATTTGGTCTAAATAG-TGTTCATTTTGT
* * * * * * *
2216 AAACATACTTTGGTCTTTAAAATAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTG
257 AAATAGA-TTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTG
* * * * ** **
2281 GACGAACTTTCGAGCTTGTCAAACTTTTACAAGTTATTTTATAACTTTTATTCCTTAAAGTATTC
321 GACGAACTTTCAAACTTGTCAAACTTCTACGAGTTCCTTTATAACTTCGATTCCTTAAAGTATTC
* * * * *
2346 AAGACGATCCATTCCTTCGAGTAATTTCCCAAACATTCCATGCTCGGGAAATCACATCAT-TTGT
386 AAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATCTTG-
* **
2410 TCTAAATAGTTTGTC-TTTTCGTAAACAAGTTTTTTTTTCTTTGAATTAAAAACTTATTTACGTG
450 TCTAAATAGTTTGTCATTTT-GTAAACAA--CTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * *
2474 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAACTTTT-CGAGTTCTTTT
512 AGAATTGTTTCTCTCTTGGTTTTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * *
2538 ATAACTTCGATTCCTTAAAGTATCCAAGATGATACGTTCCTTTGAG-ATATTTTTCGAACATTCC
577 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA-ATTTTTCGAACATTCC
2602 ATG
641 ATG
2605 CTCG-GAAAATCACATCATTTGGTC
1 CTCGAG-AAATCACATCATTTGGTC
2629 AAAATTGATG
Statistics
Matches: 1663, Mismatches: 256, Indels: 73
0.83 0.13 0.04
Matches are distributed among these distances:
641 5 0.00
642 561 0.34
643 345 0.21
644 118 0.07
645 569 0.34
646 8 0.00
647 18 0.01
648 39 0.02
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (643 bp):
CTCGAGAAATCACATCATTTGGTCTAAACAGTTTGTCATTTTGTTAACTTTTGGTCTTTGAATTA
AAAACTTATTTACGTGAGAGTTGTTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
ATTTACGAGTTCATTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
TTTTCCGAACATTCCATACTCGGAAAATCACATCATTTGGTCTAAATAGTGTTCATTTTGTAAAT
AGATTAGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGA
ACTTTCAAACTTGTCAAACTTCTACGAGTTCCTTTATAACTTCGATTCCTTAAAGTATTCAAGAC
GATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATCTTGTCTAAA
TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
TCTCTCTTGGTTTTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
Done.