Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009214.1 Kokia drynarioides strain JFW-HI SEQ_123919, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1903
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34


Found at i:1334 original size:151 final size:151

Alignment explanation


    Indices: 1106--1419  Score: 484
    Period size: 151  Copynumber: 2.1  Consensus size: 151

       1096 ACTCCTATGT

                  * *                                                        
       1106 TATTTTCTTTAAGCATGCCATGATATCAACATGTAATCGCCCACATTTTGAGTAGCATCCCAAAC
          1 TATTTTGTCTAAGCATGCCATGATATCAACATGTAATCGCCCACATTTTGAGTAGCATCCCAAAC

                                                 *       * * * *    *     *  
       1171 CAAACATTATTGTCTAACAAAACACGTCAGTCTAACATACTGAAGGTCTTCGATTCGAGTCCTAG
         66 CAAACATTATTGTCTAACAAAACACGTCAGTCTAACACACTGAAGATATCCAATTCAAGTCCGAG

                                 
       1236 CGAAGCCACTGCCTTCAAATA
        131 CGAAGCCACTGCCTTCAAATA

                                                     *                       
       1257 TATTTTGTCTAAGCATGCCATGATATCAACATGTAATCGCCGACATTTTGAGTAGCATCCCAAAC
          1 TATTTTGTCTAAGCATGCCATGATATCAACATGTAATCGCCCACATTTTGAGTAGCATCCCAAAC

                **                                                      *  * 
       1322 CAAATTTTATTGTCTAACAAAACACGTCAGTCTAACACACTGAAGATATCCAATTCAAGTGCGGG
         66 CAAACATTATTGTCTAACAAAACACGTCAGTCTAACACACTGAAGATATCCAATTCAAGTCCGAG

            *       *            
       1387 TGAAGCCATTGCCTTCAAATA
        131 CGAAGCCACTGCCTTCAAATA

                        
       1408 TATTTTGTCTAA
          1 TATTTTGTCTAA

       1420 TTTTTAGACA


Statistics
Matches: 147,  Mismatches: 16, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
 151  147  1.00

ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30


Consensus pattern (151 bp):   
TATTTTGTCTAAGCATGCCATGATATCAACATGTAATCGCCCACATTTTGAGTAGCATCCCAAAC
CAAACATTATTGTCTAACAAAACACGTCAGTCTAACACACTGAAGATATCCAATTCAAGTCCGAG
CGAAGCCACTGCCTTCAAATA
Done.