Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009215.1 Kokia drynarioides strain JFW-HI SEQ_123920, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4124
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:616 original size:20 final size:19

Alignment explanation


    Indices: 583--621  Score: 51
    Period size: 20  Copynumber: 2.0  Consensus size: 19

        573 TCTAATGAAT

                    **          
        583 ATTGGAAATGTGAAACGACA
          1 ATTGGAAACATGAAA-GACA

                               
        603 ATTGGAAACATGAAAGACA
          1 ATTGGAAACATGAAAGACA

        622 GTAGCTATGA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  19    4  0.24
  20   13  0.76

ACGTcount: A:0.49, C:0.10, G:0.23, T:0.18


Consensus pattern (19 bp):   
ATTGGAAACATGAAAGACA
Done.