Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009218.1 Kokia drynarioides strain JFW-HI SEQ_123923, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9144
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:7070 original size:24 final size:24

Alignment explanation


    Indices: 7028--7086  Score: 75
    Period size: 24  Copynumber: 2.5  Consensus size: 24

       7018 TTTGTAGTTC

                 *                  
       7028 AAATAAATTA-ATTAATAAATATA
          1 AAATATATTATATTAATAAATATA

                                 * *
       7051 AAATATATTATATTAATAAATGTT
          1 AAATATATTATATTAATAAATATA

                  *     
       7075 AAATATTTTATA
          1 AAATATATTATA

       7087 AAGAAAATAT


Statistics
Matches: 31,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  23    9  0.29
  24   22  0.71

ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42


Consensus pattern (24 bp):   
AAATATATTATATTAATAAATATA
Done.