Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009224.1 Kokia drynarioides strain JFW-HI SEQ_123929, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1845
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:1325 original size:18 final size:18

Alignment explanation


    Indices: 1302--1343  Score: 84
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       1292 GAACCTCCTT

                              
       1302 GTAAGGCTTAGCAAAAGG
          1 GTAAGGCTTAGCAAAAGG

                              
       1320 GTAAGGCTTAGCAAAAGG
          1 GTAAGGCTTAGCAAAAGG

                  
       1338 GTAAGG
          1 GTAAGG

       1344 TACGCCACGC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   24  1.00

ACGTcount: A:0.38, C:0.10, G:0.36, T:0.17


Consensus pattern (18 bp):   
GTAAGGCTTAGCAAAAGG
Done.