Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009225.1 Kokia drynarioides strain JFW-HI SEQ_123930, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4006
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34


Found at i:3185 original size:65 final size:65

Alignment explanation


    Indices: 3081--3211  Score: 226
    Period size: 65  Copynumber: 2.0  Consensus size: 65

       3071 AATTATTTTT

                                                    *                        
       3081 ATTATATATGTGATGTTCATATTTTCCAATACATGGCAGAGCATTAATTGAATAACTTAGTATAA
          1 ATTATATATGTGATGTTCATATTTTCCAATACATGGCAGAACATTAATTGAATAACTTAGTATAA

                     *                                    *              *   
       3146 ATTATATATTTGATGTTCATATTTTCCAATACATGGCAGAACATTACTTGAATAACTTAGTTTAA
          1 ATTATATATGTGATGTTCATATTTTCCAATACATGGCAGAACATTAATTGAATAACTTAGTATAA

             
       3211 A
          1 A

       3212 GTGTTGCAAC


Statistics
Matches: 62,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  65   62  1.00

ACGTcount: A:0.37, C:0.11, G:0.12, T:0.40


Consensus pattern (65 bp):   
ATTATATATGTGATGTTCATATTTTCCAATACATGGCAGAACATTAATTGAATAACTTAGTATAA
Done.