Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009227.1 Kokia drynarioides strain JFW-HI SEQ_123932, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2612
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38


Found at i:1476 original size:22 final size:22

Alignment explanation


    Indices: 1448--1499  Score: 79
    Period size: 21  Copynumber: 2.4  Consensus size: 22

       1438 ATTTAATTTC

                       *          
       1448 AAAAAAAATTAGTAATT-AAAT
          1 AAAAAAAATTAATAATTCAAAT

                                  
       1469 AAAAAAAATTAATAATTCAAAT
          1 AAAAAAAATTAATAATTCAAAT

               *     
       1491 AAATAAAAT
          1 AAAAAAAAT

       1500 AGAACGAAGA


Statistics
Matches: 28,  Mismatches: 2, Indels: 1
        0.90            0.06        0.03

Matches are distributed among these distances:
  21   16  0.57
  22   12  0.43

ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27


Consensus pattern (22 bp):   
AAAAAAAATTAATAATTCAAAT
Done.