Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009228.1 Kokia drynarioides strain JFW-HI SEQ_123933, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2979
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35


Found at i:994 original size:22 final size:22

Alignment explanation


    Indices: 946--997  Score: 79
    Period size: 21  Copynumber: 2.4  Consensus size: 22

        936 TCTTCGTTCT

                 *             *  
        946 ATTTTATTTATTTGAATTATTA
          1 ATTTTTTTTATTTGAATTACTA

                                  
        968 ATTTTTTTTATTT-AATTACTA
          1 ATTTTTTTTATTTGAATTACTA

                     
        989 ATTTTTTTT
          1 ATTTTTTTT

        998 GAAATTAAAT


Statistics
Matches: 28,  Mismatches: 2, Indels: 1
        0.90            0.06        0.03

Matches are distributed among these distances:
  21   16  0.57
  22   12  0.43

ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69


Consensus pattern (22 bp):   
ATTTTTTTTATTTGAATTACTA
Done.