Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000923.1 Kokia drynarioides strain JFW-HI SEQ_112072, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7123
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32


Found at i:698 original size:21 final size:22

Alignment explanation


    Indices: 646--698  Score: 63
    Period size: 21  Copynumber: 2.4  Consensus size: 22

        636 TTAGCACTAG

                                  *
        646 CTCTCTGATTAGAACTTTGTGTG
          1 CTCTCTG-TTAGAACTTTGTGTA

                *      *          
        669 CTCTTTGTTAGTACTTTG-GTA
          1 CTCTCTGTTAGAACTTTGTGTA

                     
        690 CTCTCTGTT
          1 CTCTCTGTT

        699 CGTTCCGTAT


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  21   10  0.38
  22   10  0.38
  23    6  0.23

ACGTcount: A:0.13, C:0.19, G:0.19, T:0.49


Consensus pattern (22 bp):   
CTCTCTGTTAGAACTTTGTGTA
Done.