Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009235.1 Kokia drynarioides strain JFW-HI SEQ_123940, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4139
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:175 original size:20 final size:20

Alignment explanation


    Indices: 152--189  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        142 ATTTAGTCAT

                       *        
        152 TTTTATTTTTATTTTAATAC
          1 TTTTATTTTTAATTTAATAC

                              
        172 TTTTATTTTTAATTTAAT
          1 TTTTATTTTTAATTTAAT

        190 TTTTAAATCC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71


Consensus pattern (20 bp):   
TTTTATTTTTAATTTAATAC
Done.