Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009241.1 Kokia drynarioides strain JFW-HI SEQ_123946, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6605
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31


Found at i:1169 original size:26 final size:27

Alignment explanation


    Indices: 1140--1196  Score: 80
    Period size: 26  Copynumber: 2.1  Consensus size: 27

       1130 AAGTCAACGA

                  *           *        
       1140 TCAACGGGTCAAAGTCAATGGGTT-GG
          1 TCAACGAGTCAAAGTCAACGGGTTGGG

                         *             
       1166 TCAACGAGTCAAATTCAACGGGTTGGG
          1 TCAACGAGTCAAAGTCAACGGGTTGGG

                
       1193 TCAA
          1 TCAA

       1197 AGTTAACGGG


Statistics
Matches: 27,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  26   21  0.78
  27    6  0.22

ACGTcount: A:0.30, C:0.18, G:0.30, T:0.23


Consensus pattern (27 bp):   
TCAACGAGTCAAAGTCAACGGGTTGGG
Done.