Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009243.1 Kokia drynarioides strain JFW-HI SEQ_123948, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3503
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:3447 original size:100 final size:100

Alignment explanation


    Indices: 3272--3471  Score: 287
    Period size: 100  Copynumber: 2.0  Consensus size: 100

       3262 AAGTACGAGG

                                                             *               
       3272 TCCTTAGTGAATGAATGTGAAGTCAAATTTTGATTCGACCGAAAAAATTGAGAGTTACGAGCATT
          1 TCCTTAGTGAATGAATGTGAAGTCAAATTTTGATTCGACCGAAAAAATTAAGAGTTACGAGCATT

               *            *                  
       3337 TCATACATTATGGTTTGAAAGGGGACTTAATTGTA
         66 TCAGACATTATGGTTTAAAAGGGGACTTAATTGTA

                                    ***             *  *                     
       3372 TCCTTAGTGAATGAATGTGAAGTCGGGTTTTGATTCGATCTG-GAAAATTAAGA-TATACGAGCA
          1 TCCTTAGTGAATGAATGTGAAGTCAAATTTTGATTCGA-CCGAAAAAATTAAGAGT-TACGAGCA

                   *                             
       3435 TTTCAGATATTATGGTTTAAAAGGGGACTTAATTGTA
         64 TTTCAGACATTATGGTTTAAAAGGGGACTTAATTGTA

       3472 AAAATACAAA


Statistics
Matches: 89,  Mismatches: 9, Indels: 4
        0.87            0.09        0.04

Matches are distributed among these distances:
  99    1  0.01
 100   86  0.97
 101    2  0.02

ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34


Consensus pattern (100 bp):   
TCCTTAGTGAATGAATGTGAAGTCAAATTTTGATTCGACCGAAAAAATTAAGAGTTACGAGCATT
TCAGACATTATGGTTTAAAAGGGGACTTAATTGTA
Done.