Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009247.1 Kokia drynarioides strain JFW-HI SEQ_123952, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6149
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30


Found at i:3435 original size:35 final size:35

Alignment explanation


    Indices: 3389--3459  Score: 142
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       3379 AAACTAGAAT

                                               
       3389 TCTTAATGGTTGATGTATATATAACATAACCCCAC
          1 TCTTAATGGTTGATGTATATATAACATAACCCCAC

                                               
       3424 TCTTAATGGTTGATGTATATATAACATAACCCCAC
          1 TCTTAATGGTTGATGTATATATAACATAACCCCAC

             
       3459 T
          1 T

       3460 GCATAGTTAC


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   36  1.00

ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35


Consensus pattern (35 bp):   
TCTTAATGGTTGATGTATATATAACATAACCCCAC
Done.