Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009265.1 Kokia drynarioides strain JFW-HI SEQ_123970, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6062
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34


Found at i:5915 original size:16 final size:16

Alignment explanation


    Indices: 5890--5935  Score: 60
    Period size: 16  Copynumber: 2.9  Consensus size: 16

       5880 GGGAAATGTG

                             
       5890 TAAA-AAACAT-AAATA
          1 TAAATAAACATGAAA-A

                            
       5905 TAAATAAACATGAAAA
          1 TAAATAAACATGAAAA

                    *      
       5921 TAAATAAAGATGAAA
          1 TAAATAAACATGAAA

       5936 TAAGCATAAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  15    4  0.14
  16   21  0.75
  17    3  0.11

ACGTcount: A:0.70, C:0.04, G:0.07, T:0.20


Consensus pattern (16 bp):   
TAAATAAACATGAAAA
Done.