Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009267.1 Kokia drynarioides strain JFW-HI SEQ_123972, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4676
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38


Found at i:1133 original size:33 final size:33

Alignment explanation


    Indices: 1091--1157  Score: 134
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       1081 AGAGTATATG

                                             
       1091 TTGATTTAAGTTGGAACTCTTTAACAGGTTATC
          1 TTGATTTAAGTTGGAACTCTTTAACAGGTTATC

                                             
       1124 TTGATTTAAGTTGGAACTCTTTAACAGGTTATC
          1 TTGATTTAAGTTGGAACTCTTTAACAGGTTATC

             
       1157 T
          1 T

       1158 CCCAAAGTCC


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   34  1.00

ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43


Consensus pattern (33 bp):   
TTGATTTAAGTTGGAACTCTTTAACAGGTTATC
Done.