Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009269.1 Kokia drynarioides strain JFW-HI SEQ_123974, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21550
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36

Warning! 17 characters in sequence are not A, C, G, or T


Found at i:21068 original size:3 final size:3

Alignment explanation


    Indices: 21060--21099  Score: 80
    Period size: 3  Copynumber: 13.3  Consensus size: 3

      21050 ATATTACTTT

                                                                 
      21060 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A

      21100 CAACAAAGAT


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
ATA

Found at i:21500 original size:2 final size:2

Alignment explanation


    Indices: 21487--21550  Score: 119
    Period size: 2  Copynumber: 32.0  Consensus size: 2

      21477 ACCTCCATCA

                      *                                                   
      21487 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                                            
      21529 AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT


Statistics
Matches: 60,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   2   60  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.