Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009270.1 Kokia drynarioides strain JFW-HI SEQ_123975, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6297
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Found at i:4806 original size:16 final size:16

Alignment explanation


    Indices: 4762--4808  Score: 51
    Period size: 16  Copynumber: 2.9  Consensus size: 16

       4752 GGGGAATATG

                *            
       4762 TAAAAAAACAT-AAATA
          1 TAAATAAACATGAAA-A

                  *         
       4778 TAAATAGACATGAAAA
          1 TAAATAAACATGAAAA

                    *      
       4794 TAAATAAATATGAAA
          1 TAAATAAACATGAAA

       4809 TGAGAATAAA


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  16   23  0.88
  17    3  0.12

ACGTcount: A:0.68, C:0.04, G:0.06, T:0.21


Consensus pattern (16 bp):   
TAAATAAACATGAAAA

Found at i:4816 original size:21 final size:20

Alignment explanation


    Indices: 4777--4822  Score: 65
    Period size: 21  Copynumber: 2.2  Consensus size: 20

       4767 AAACATAAAT

                     *          
       4777 ATAAATAGACATGAAAATAA
          1 ATAAATAGAAATGAAAATAA

                           *     
       4797 ATAAATATGAAATGAGAATAA
          1 ATAAATA-GAAATGAAAATAA

                 
       4818 ATAAA
          1 ATAAA

       4823 AATTTCGTAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  20    7  0.30
  21   16  0.70

ACGTcount: A:0.65, C:0.02, G:0.11, T:0.22


Consensus pattern (20 bp):   
ATAAATAGAAATGAAAATAA
Done.