Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009276.1 Kokia drynarioides strain JFW-HI SEQ_123981, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5337
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40


Found at i:2214 original size:14 final size:14

Alignment explanation


    Indices: 2180--2214  Score: 52
    Period size: 14  Copynumber: 2.5  Consensus size: 14

       2170 GCCGCCCATA

                        * 
       2180 TTATTTTTAAATTT
          1 TTATTTTTAAATAT

              *           
       2194 TTTTTTTTAAATAT
          1 TTATTTTTAAATAT

                   
       2208 TTATTTT
          1 TTATTTT

       2215 ATTTTATTTT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74


Consensus pattern (14 bp):   
TTATTTTTAAATAT

Found at i:2773 original size:45 final size:45

Alignment explanation


    Indices: 2709--2801  Score: 186
    Period size: 45  Copynumber: 2.1  Consensus size: 45

       2699 CATGCTAAAT

                                                         
       2709 CTCGGGGTTTCTGATCATATGATCCCTGGACAACCAACTTTATCC
          1 CTCGGGGTTTCTGATCATATGATCCCTGGACAACCAACTTTATCC

                                                         
       2754 CTCGGGGTTTCTGATCATATGATCCCTGGACAACCAACTTTATCC
          1 CTCGGGGTTTCTGATCATATGATCCCTGGACAACCAACTTTATCC

               
       2799 CTC
          1 CTC

       2802 AAGAATAAAA


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  45   48  1.00

ACGTcount: A:0.22, C:0.30, G:0.17, T:0.31


Consensus pattern (45 bp):   
CTCGGGGTTTCTGATCATATGATCCCTGGACAACCAACTTTATCC
Done.