Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000928.1 Kokia drynarioides strain JFW-HI SEQ_112079, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1106
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29


Found at i:788 original size:41 final size:41

Alignment explanation


    Indices: 731--814  Score: 168
    Period size: 41  Copynumber: 2.0  Consensus size: 41

        721 AACCCTAAAC

                                                     
        731 AATAGGGAATGACATGTGAAATCAAACCAGACCAGTATATG
          1 AATAGGGAATGACATGTGAAATCAAACCAGACCAGTATATG

                                                     
        772 AATAGGGAATGACATGTGAAATCAAACCAGACCAGTATATG
          1 AATAGGGAATGACATGTGAAATCAAACCAGACCAGTATATG

              
        813 AA
          1 AA

        815 CCCTAAACAA


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  41   43  1.00

ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19


Consensus pattern (41 bp):   
AATAGGGAATGACATGTGAAATCAAACCAGACCAGTATATG
Done.