Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009280.1 Kokia drynarioides strain JFW-HI SEQ_123985, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 656

Length: 1094
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34


Found at i:420 original size:25 final size:26

Alignment explanation


    Indices: 382--437  Score: 80
    Period size: 25  Copynumber: 2.2  Consensus size: 26

        372 TAAATTTTAT

                             *        
        382 AATAATATTATATTAATGTTAAATAA
          1 AATAATATTATATTAATATTAAATAA

                                       
        408 ATATAAT-TT-TATTAATATTAAATAA
          1 A-ATAATATTATATTAATATTAAATAA

                 
        433 AATAA
          1 AATAA

        438 AGAGTTTCCT


Statistics
Matches: 28,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  24    4  0.14
  25   16  0.57
  26    3  0.11
  27    5  0.18

ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43


Consensus pattern (26 bp):   
AATAATATTATATTAATATTAAATAA
Done.