Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009282.1 Kokia drynarioides strain JFW-HI SEQ_123987, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10250
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.36


Found at i:8520 original size:17 final size:17

Alignment explanation


    Indices: 8469--8523  Score: 65
    Period size: 17  Copynumber: 3.2  Consensus size: 17

       8459 TCATCTATCG

                              
       8469 TATTTTTTTGATAAATTT
          1 TATTTTTTT-ATAAATTT

                   *    *    
       8487 TATTTTTATATATATTT
          1 TATTTTTTTATAAATTT

                     *  *    
       8504 TATTTTTTTCTAGATTT
          1 TATTTTTTTATAAATTT

               
       8521 TAT
          1 TAT

       8524 ATATTTTTTG


Statistics
Matches: 32,  Mismatches: 5, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  17   24  0.75
  18    8  0.25

ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69


Consensus pattern (17 bp):   
TATTTTTTTATAAATTT

Found at i:8530 original size:20 final size:19

Alignment explanation


    Indices: 8507--8570  Score: 53
    Period size: 20  Copynumber: 3.3  Consensus size: 19

       8497 TATATTTTAT

                                
       8507 TTTTTTCTAGATTTTATATA
          1 TTTTTTCTA-ATTTTATATA

                   *            *
       8527 TTTTTT-GAATTTTTTATATG
          1 TTTTTTCTAA--TTTTATATA

                                
       8547 TTTATTTCT-ATTTT-TATA
          1 TTT-TTTCTAATTTTATATA

                  
       8565 TTTTTT
          1 TTTTTT

       8571 AATGTGTATA


Statistics
Matches: 36,  Mismatches: 4, Indels: 11
        0.71            0.08        0.22

Matches are distributed among these distances:
  17    3  0.08
  18    7  0.19
  19    5  0.14
  20   17  0.47
  21    4  0.11

ACGTcount: A:0.20, C:0.03, G:0.05, T:0.72


Consensus pattern (19 bp):   
TTTTTTCTAATTTTATATA
Done.