Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009290.1 Kokia drynarioides strain JFW-HI SEQ_123996, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2641
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.35


Found at i:959 original size:9 final size:9

Alignment explanation


    Indices: 933--975  Score: 50
    Period size: 9  Copynumber: 4.8  Consensus size: 9

        923 TTTTCAGTTG

                     
        933 TAATTAATT
          1 TAATTAATT

               **    
        942 TAAAAAATT
          1 TAATTAATT

                     
        951 TAATTAATT
          1 TAATTAATT

            *    *   
        960 AAATTTATT
          1 TAATTAATT

                   
        969 TAATTAA
          1 TAATTAA

        976 AAATTTATTA


Statistics
Matches: 26,  Mismatches: 8, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
   9   26  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (9 bp):   
TAATTAATT

Found at i:969 original size:18 final size:16

Alignment explanation


    Indices: 944--984  Score: 59
    Period size: 14  Copynumber: 2.7  Consensus size: 16

        934 AATTAATTTA

                     *      
        944 AAAAATTTAATTAATT
          1 AAAAATTTATTTAATT

                            
        960 --AAATTTATTTAATT
          1 AAAAATTTATTTAATT

                       
        974 AAAAATTTATT
          1 AAAAATTTATT

        985 ATCATTCCAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 4
        0.81            0.04        0.15

Matches are distributed among these distances:
  14   13  0.59
  16    9  0.41

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (16 bp):   
AAAAATTTATTTAATT
Done.