Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009295.1 Kokia drynarioides strain JFW-HI SEQ_124001, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8719
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30


Found at i:6461 original size:18 final size:17

Alignment explanation


    Indices: 6438--6476  Score: 51
    Period size: 17  Copynumber: 2.2  Consensus size: 17

       6428 TTTTATTTAG

                  *           
       6438 TTGTCATTGCATTTTCAT
          1 TTGTCACTGCA-TTTCAT

                     *       
       6456 TTGTCACTGTATTTCAT
          1 TTGTCACTGCATTTCAT

                
       6473 TTGT
          1 TTGT

       6477 TAGTACATCT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  17   10  0.53
  18    9  0.47

ACGTcount: A:0.15, C:0.15, G:0.13, T:0.56


Consensus pattern (17 bp):   
TTGTCACTGCATTTCAT
Done.