Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009298.1 Kokia drynarioides strain JFW-HI SEQ_124004, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4436
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30


Found at i:589 original size:18 final size:19

Alignment explanation


    Indices: 560--595  Score: 56
    Period size: 18  Copynumber: 1.9  Consensus size: 19

        550 TTAGAATATG

                        *      
        560 AAATTGTAAATTTATTTAA
          1 AAATTGTAAATTCATTTAA

                              
        579 AAATT-TAAATTCATTTA
          1 AAATTGTAAATTCATTTA

        596 TCATTTACAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18   11  0.69
  19    5  0.31

ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47


Consensus pattern (19 bp):   
AAATTGTAAATTCATTTAA
Done.