Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009299.1 Kokia drynarioides strain JFW-HI SEQ_124006, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1841
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


Found at i:1727 original size:13 final size:14

Alignment explanation


    Indices: 1699--1736  Score: 51
    Period size: 13  Copynumber: 2.8  Consensus size: 14

       1689 ACGATACGAA

                     *    
       1699 AATATGACATATAC
          1 AATATGACAAATAC

                          
       1713 AATATGA-AAATAC
          1 AATATGACAAATAC

              *        
       1726 AACATGACAAA
          1 AATATGACAAA

       1737 CTGTAAATGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  13   11  0.52
  14   10  0.48

ACGTcount: A:0.58, C:0.13, G:0.08, T:0.21


Consensus pattern (14 bp):   
AATATGACAAATAC

Found at i:1730 original size:22 final size:22

Alignment explanation


    Indices: 1687--1730  Score: 52
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1677 AACACAGCAA

                *           **    
       1687 ATACGATACGAAAATATGACAT
          1 ATACAATACGAAAATACAACAT

                    *             
       1709 ATACAATATGAAAATACAACAT
          1 ATACAATACGAAAATACAACAT

       1731 GACAAACTGT


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.55, C:0.14, G:0.09, T:0.23


Consensus pattern (22 bp):   
ATACAATACGAAAATACAACAT
Done.