Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009302.1 Kokia drynarioides strain JFW-HI SEQ_124009, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1883
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:1534 original size:72 final size:72

Alignment explanation


    Indices: 1469--1625  Score: 176
    Period size: 72  Copynumber: 2.2  Consensus size: 72

       1459 GGTTTAGAAC

                *                  *                  *    **   *            
       1469 TGATGATGGAATTTGCCCACTCAGTTGGTTC-CATGACAAGTGTAAACGAGTGAGTTGCAAGAGG
          1 TGATCATGGAATTTGCCCACTCAATTGGTTCGC-TGACAAGTCTAAAAAAGTAAGTTGCAAGAGG

                *   
       1533 TTCCCCAA
         65 TTCCACAA

                 *         *                                                 
       1541 TGATCTTGGAATTTGTCCACTCAATTGGTTCGCTGACAAGTCTAAAAAAGTAAGTTGCAAGAGGC
          1 TGATCATGGAATTTGCCCACTCAATTGGTTCGCTGACAAGTCTAAAAAAGTAAGTTGCAAGAGG-

                   *
       1606 TTCC-CAG
         65 TTCCACAA

                          
       1613 TGATC-TCGGAATT
          1 TGATCAT-GGAATT

       1626 GGTCCTGATA


Statistics
Matches: 73,  Mismatches: 9, Indels: 6
        0.83            0.10        0.07

Matches are distributed among these distances:
  71    1  0.01
  72   67  0.92
  73    5  0.07

ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29


Consensus pattern (72 bp):   
TGATCATGGAATTTGCCCACTCAATTGGTTCGCTGACAAGTCTAAAAAAGTAAGTTGCAAGAGGT
TCCACAA
Done.