Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009304.1 Kokia drynarioides strain JFW-HI SEQ_124011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3718
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34


Found at i:1889 original size:52 final size:52

Alignment explanation


    Indices: 1508--1888  Score: 568
    Period size: 52  Copynumber: 7.3  Consensus size: 52

       1498 AGCTAGGATG

                              *      *            *             
       1508 ACATAGTCATCGGACCTCTTAATCCATAAAGGATTCATGTACTCACGATGAC
          1 ACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGAC

                                    **                           
       1560 ACATA-TCCATCGGACCTCATAATTTGTAAAGGATTCATATACTCACGATGAC
          1 ACATAGT-CATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGAC

                  *    *                   *              *     
       1612 ACATAGCCATCAGACCTCATAATCCGTAAAGCATTCATATACTCACTATGAC
          1 ACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGAC

             *    *                                             
       1664 ATATAGCCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGAC
          1 ACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGAC

                       *  **                                    
       1716 ACATAGTCATCAGATATCATAATCCGTAAAGGATTCATATACTCACGATGAC
          1 ACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGAC

             *                                                  
       1768 AGATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGAC
          1 ACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGAC

             *               *                            *      
       1820 AGATAGTCATCGGACCTTATAATCCGTAAAGGATTCATATACTCA-TAGTGAC
          1 ACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGA-TGAC

                             
       1872 ACATAGTCATCGGACCT
          1 ACATAGTCATCGGACCT

       1889 TTTTCATTTA


Statistics
Matches: 299,  Mismatches: 27, Indels: 6
        0.90            0.08        0.02

Matches are distributed among these distances:
  51    2  0.01
  52  297  0.99

ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27


Consensus pattern (52 bp):   
ACATAGTCATCGGACCTCATAATCCGTAAAGGATTCATATACTCACGATGAC
Done.