Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009311.1 Kokia drynarioides strain JFW-HI SEQ_124018, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5993
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.30

Warning! 132 characters in sequence are not A, C, G, or T


Found at i:5072 original size:16 final size:16

Alignment explanation


    Indices: 5051--5100  Score: 55
    Period size: 16  Copynumber: 3.0  Consensus size: 16

       5041 TATTATTTTT

                            
       5051 ATATAAAAAATTAAAA
          1 ATATAAAAAATTAAAA

                  * *  *    
       5067 ATATAATACATCAAAA
          1 ATATAAAAAATTAAAA

                              
       5083 ATATTAAAAACATTAAAA
          1 ATA-TAAAAA-ATTAAAA

       5101 TAAATATTTT


Statistics
Matches: 26,  Mismatches: 6, Indels: 2
        0.76            0.18        0.06

Matches are distributed among these distances:
  16   16  0.62
  17    4  0.15
  18    6  0.23

ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26


Consensus pattern (16 bp):   
ATATAAAAAATTAAAA
Done.