Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009313.1 Kokia drynarioides strain JFW-HI SEQ_124020, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2449
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35


Found at i:238 original size:24 final size:24

Alignment explanation


    Indices: 211--291  Score: 144
    Period size: 24  Copynumber: 3.4  Consensus size: 24

        201 CAAAATGGTA

                                    
        211 TGGTGGAACGCAAGCATAGACAGG
          1 TGGTGGAACGCAAGCATAGACAGG

                                *   
        235 TGGTGGAACGCAAGCATAGATAGG
          1 TGGTGGAACGCAAGCATAGACAGG

                                    
        259 TGGTGGAACGCAAGCATAGACAGG
          1 TGGTGGAACGCAAGCATAGACAGG

                *    
        283 TGGTTGAAC
          1 TGGTGGAAC

        292 TTGGTCTTAC


Statistics
Matches: 54,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  24   54  1.00

ACGTcount: A:0.32, C:0.15, G:0.37, T:0.16


Consensus pattern (24 bp):   
TGGTGGAACGCAAGCATAGACAGG
Done.