Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009327.1 Kokia drynarioides strain JFW-HI SEQ_124034, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1130
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39


Found at i:398 original size:216 final size:216

Alignment explanation


    Indices: 1--1130  Score: 1232
    Period size: 216  Copynumber: 5.3  Consensus size: 216

                                    **     *        *  *              *   ** 
          1 ATTTACGAGTTCTTTTATAACTTTACTTCCTGAGAGTATTTAATACGATCCATTCCTTCGACTTA
          1 ATTTACGAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTTGACCAA

                     *    *   * *  **     **    *                 *   *      
         66 -TTTTTCGAGCATTTCATTCCCGAAAAATCATATCACTTGGTCTAAAAAGTTTGGCATGTTGTAA
         66 TTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA

                              *                          *                   
        130 AATACTTTTGGTCTTTGATTTAAAAACTTTTTTACGTGAGAATTGATTCTCTCTTGGTTCTCGGA
        131 AA-ACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGGA

                           *      
        195 CAAACTTCCGAACTTATCAAAC
        195 CAAACTTCCGAACTTGTCAAAC

                 *                      *              *                     
        217 ATTTATGAGTTCTTTTATAACTTTGGTTTCTAAGAGTATTCAATACGATCCATTCCTTTGACCAA
          1 ATTTACGAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTTGACCAA

                             *   *        *       *            *         *   
        282 TTTTTTC-AACATTCCACGCTTGGGAAATCACATCATTGGGTCTAAAAAGTCTGTCATTTTATAA
         66 TTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA

                 *   *              *     * * *    *              *      *   
        346 ACAACATTTAGTCTTTGAATTAAACACTTTATCATGTGAAAATTGTTTCTCTCTCGGTTCTTGGA
        131 A-AACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGGA

             *  *                  
        411 CGAAGTGT-CGAACTTGTCAAAC
        195 CAAACT-TCCGAACTTGTCAAAC

                      **             * *   *   *    *      *                 
        433 ATTT-CGTAGACCTTTTATAAC-TTCGATCCCAGATAGTAGTCAAGATGATCCATTCCTTTG-CC
          1 ATTTACG-AGTTCTTTTATAACTTTGGTTCCTA-AGAGTATTCAAGACGATCCATTCCTTTGACC

                                    *                         *              
        495 AATTTTTT-GAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAAACGTTTGTCATTTTGT
         64 AATTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGT

                                       *    *                              * 
        559 AAAAACCTTTTGGTCTTTGAATTAAAATCTTTCTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
        129 AAAAA-CTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTCG

              **  *                 
        624 GATGAAGTTCCGAACTTGTCAAAC
        193 GACAAACTTCCGAACTTGTCAAAC

                  * **             *         *    *               *   *      
        648 ATTTACTAAATCTTTTATAACTTCGGTTCCTAATAGTAGTCAAGACGATCCATTTCTTCGACCAA
          1 ATTTACGAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTTGACCAA

                               *      *                    *                 
        713 -TTTTTCGAACATTCCATGATCGGGATATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
         66 TTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA

                 *                  *                                    *   
        777 ACAACCTTTGGTCTTTGAATTAAATACTTTTTTACGTGAGAATTGTTTC-CTTCTTGG---ACGG
        131 A-AACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTC-TCTTGGTTCTCGG

                    *      *       
        838 AC--A--TACGAACTAGTCAAAC
        194 ACAAACTTCCGAACTTGTCAAAC

            *     *      *         *       *    *                   *        
        857 TTTTACAAGTTCTATTATAACTTCGGTTCCTGAGAGCATTCAAGACGATCCATTCCGTTGACC-A
          1 ATTTACGAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTTGACCAA

                      *        *                            *                
        921 TTTTTTCGAAGATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAACGTTTGTCATTTTGTAA
         66 TTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA

                              *                          *              *  * 
        986 TAAACTTTTGGTCTTTGATTTAAAAACTTTTTTACGTGAGAATTGGTTCTCTCTTGGTTCACGAA
        131 -AAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGGA

                     *            
       1051 CAAACTTCCAAACTTGTCAAAC
        195 CAAACTTCCGAACTTGTCAAAC

                 *                       *             *              
       1073 ATTTATGAGTTCTTTTATAACTTTGGTTCATAAGAGTATTCAATACGATCCATTCCTT
          1 ATTTACGAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGATCCATTCCTT


Statistics
Matches: 765,  Mismatches: 125, Indels: 48
        0.82            0.13        0.05

Matches are distributed among these distances:
 208    1  0.00
 209  174  0.23
 210    2  0.00
 211    1  0.00
 212    5  0.01
 213    3  0.00
 214    4  0.01
 215  185  0.24
 216  380  0.50
 217   10  0.01

ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39


Consensus pattern (216 bp):   
ATTTACGAGTTCTTTTATAACTTTGGTTCCTAAGAGTATTCAAGACGATCCATTCCTTTGACCAA
TTTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
AAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGGAC
AAACTTCCGAACTTGTCAAAC

Done.