Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009329.1 Kokia drynarioides strain JFW-HI SEQ_124036, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2480
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26


Found at i:1953 original size:19 final size:19

Alignment explanation


    Indices: 1929--1966  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1919 TATCGAGGTT

                               
       1929 GAAATACCTTCCCTCCGAG
          1 GAAATACCTTCCCTCCGAG

                          *    
       1948 GAAATACCTTCCCTTCGAG
          1 GAAATACCTTCCCTCCGAG

       1967 TCTTAACCGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.26, C:0.34, G:0.16, T:0.24


Consensus pattern (19 bp):   
GAAATACCTTCCCTCCGAG
Done.