Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009330.1 Kokia drynarioides strain JFW-HI SEQ_124037, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4728
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32


Found at i:1008 original size:27 final size:27

Alignment explanation


    Indices: 976--1033  Score: 82
    Period size: 26  Copynumber: 2.1  Consensus size: 27

        966 AATAAAATGT

                                         
        976 TAAAAAAAAGGAAAGACTTCAAAAGAA-A
          1 TAAAAAAAA-GAAAG-CTTCAAAAGAACA

                        *              
       1004 TAAAAAAAAGAATGCTTCAAAAGAACA
          1 TAAAAAAAAGAAAGCTTCAAAAGAACA

               
       1031 TAA
          1 TAA

       1034 GGAAAAAATG


Statistics
Matches: 28,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  26   11  0.39
  27    8  0.29
  28    9  0.32

ACGTcount: A:0.66, C:0.09, G:0.12, T:0.14


Consensus pattern (27 bp):   
TAAAAAAAAGAAAGCTTCAAAAGAACA

Done.