Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009332.1 Kokia drynarioides strain JFW-HI SEQ_124039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4180
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26


Found at i:2185 original size:31 final size:31

Alignment explanation


    Indices: 2147--2208  Score: 124
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       2137 GTCAAAGACT

                                           
       2147 ACTTATCCAAGGCTCCCATCTTGGTACCTCC
          1 ACTTATCCAAGGCTCCCATCTTGGTACCTCC

                                           
       2178 ACTTATCCAAGGCTCCCATCTTGGTACCTCC
          1 ACTTATCCAAGGCTCCCATCTTGGTACCTCC

       2209 GATTCCTAAT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.19, C:0.39, G:0.13, T:0.29


Consensus pattern (31 bp):   
ACTTATCCAAGGCTCCCATCTTGGTACCTCC
Done.