Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009333.1 Kokia drynarioides strain JFW-HI SEQ_124040, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38959
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Found at i:382 original size:20 final size:20
Alignment explanation
Indices: 357--401 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
347 GAACAAAATA
357 GTGAATTAGGGATAAGCAAT
1 GTGAATTAGGGATAAGCAAT
* *
377 GTGAATTAGGGGTAAGGAAT
1 GTGAATTAGGGATAAGCAAT
397 GTGAA
1 GTGAA
402 ATTTATTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.38, C:0.02, G:0.36, T:0.24
Consensus pattern (20 bp):
GTGAATTAGGGATAAGCAAT
Found at i:5289 original size:12 final size:12
Alignment explanation
Indices: 5272--5315 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
5262 TTTTCAAATG
5272 TTTAAGGGCTGA
1 TTTAAGGGCTGA
5284 TTTAAGGTGCTGA
1 TTTAAGG-GCTGA
5297 --T-AGGGCTGA
1 TTTAAGGGCTGA
5306 TTTAAGGGCT
1 TTTAAGGGCT
5316 CTGCTCCAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
9 5 0.18
10 3 0.11
11 2 0.07
12 13 0.46
13 5 0.18
ACGTcount: A:0.23, C:0.09, G:0.34, T:0.34
Consensus pattern (12 bp):
TTTAAGGGCTGA
Found at i:8497 original size:46 final size:46
Alignment explanation
Indices: 8447--8560 Score: 147
Period size: 46 Copynumber: 2.5 Consensus size: 46
8437 TAGCTCCTGT
* * *
8447 ATATGTTACGGATTGGAGAATACGGATGTAGGTTCCCAACTCCTAC
1 ATATGTTGCGGAATGGAGAATACAGATGTAGGTTCCCAACTCCTAC
* * * ** *
8493 ATATGTTGCGGACTGGAGAATACAGATTTAGGTTCCTAGTTCCTGC
1 ATATGTTGCGGAATGGAGAATACAGATGTAGGTTCCCAACTCCTAC
8539 ATATGTTGCGGAATGGAGAATA
1 ATATGTTGCGGAATGGAGAATA
8561 AAAAAAACAT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (46 bp):
ATATGTTGCGGAATGGAGAATACAGATGTAGGTTCCCAACTCCTAC
Found at i:10227 original size:52 final size:53
Alignment explanation
Indices: 10063--10242 Score: 181
Period size: 53 Copynumber: 3.4 Consensus size: 53
10053 GCCTTTGATA
* * * *
10063 ACTCACGATGATACAGAGTCATC-GAACAT-TTAATCCGTAATAGGATCCATGT
1 ACTCACGATGATACATAGTCATCAG-ACCTGTTAATCCGTAATAGGATTCATAT
* * * * *
10115 ACTCACGATGACACATAATCAT-AGGA-CTAGTAAATCCATAGTAGGATTCATAT
1 ACTCACGATGATACATAGTCATCA-GACCT-GTTAATCCGTAATAGGATTCATAT
*
10168 ACTCACGATGATATATAGTCATCAGACCTGTTAATCCGTAATA-GATTCATAT
1 ACTCACGATGATACATAGTCATCAGACCTGTTAATCCGTAATAGGATTCATAT
* * *
10220 ACTCACGATAACACATTGTCATC
1 ACTCACGATGATACATAGTCATC
10243 GAACCTTTTA
Statistics
Matches: 103, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
51 1 0.01
52 48 0.47
53 51 0.50
54 3 0.03
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.28
Consensus pattern (53 bp):
ACTCACGATGATACATAGTCATCAGACCTGTTAATCCGTAATAGGATTCATAT
Found at i:10927 original size:212 final size:212
Alignment explanation
Indices: 10560--10987 Score: 730
Period size: 212 Copynumber: 2.0 Consensus size: 212
10550 GAAATTTATG
* * *
10560 AAATTACACCTAGCTTTTCACTTTTATTCCATTTAGTCACTAAACACAAAACATGTGAAACAACC
1 AAATTACACCTAACATTTCACTTTTATTCCATTTAGCCACTAAACACAAAACATGTGAAACAACC
* *
10625 TCTTTCTCACTAAACCCATACCAACCGATTGCTCCAAGCTTCCATACAAGTCCCTACAATTTAGC
66 CCTTTCTCACTAAACCCATACCAACCGATTGCTCCAAGCTTCCATACAAGTCCATACAATTTAGC
* *
10690 CGTTTCACACCAAATACCCACATTTTTATCATTTTAACATTTTAGTCCACAAACTCAAATTTAAT
131 CATTTCACACCAAATACCCACATTTTCATCATTTTAACATTTTAGTCCACAAACTCAAATTTAAT
10755 CAAAAATCACTTTACAA
196 CAAAAATCACTTTACAA
* * * *
10772 AAATTACCCCTAACATTTCACTTTTATTCCATTTAGCCTCTAAACACAAAATATGTGAAATAACC
1 AAATTACACCTAACATTTCACTTTTATTCCATTTAGCCACTAAACACAAAACATGTGAAACAACC
*
10837 CCTTTCTCACTAAACCCATACCAGCCGATTGCTCCAAGCTTCCATACAAGTCCATACAATTTAGC
66 CCTTTCTCACTAAACCCATACCAACCGATTGCTCCAAGCTTCCATACAAGTCCATACAATTTAGC
* *
10902 CATTTCACACCAAATACCCACATTTTCATCATTTTAACATTTTAGTCCACAAACTCTAATTTCAT
131 CATTTCACACCAAATACCCACATTTTCATCATTTTAACATTTTAGTCCACAAACTCAAATTTAAT
10967 CAAAAATCACTTTACAA
196 CAAAAATCACTTTACAA
10984 AAAT
1 AAAT
10988 CTCAAACCTA
Statistics
Matches: 202, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
212 202 1.00
ACGTcount: A:0.36, C:0.28, G:0.05, T:0.31
Consensus pattern (212 bp):
AAATTACACCTAACATTTCACTTTTATTCCATTTAGCCACTAAACACAAAACATGTGAAACAACC
CCTTTCTCACTAAACCCATACCAACCGATTGCTCCAAGCTTCCATACAAGTCCATACAATTTAGC
CATTTCACACCAAATACCCACATTTTCATCATTTTAACATTTTAGTCCACAAACTCAAATTTAAT
CAAAAATCACTTTACAA
Found at i:11276 original size:2 final size:2
Alignment explanation
Indices: 11271--11296 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
11261 CTTTAATTTC
11271 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
11297 TAATGTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13100 original size:13 final size:13
Alignment explanation
Indices: 13084--13108 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13074 ACATGAATAA
13084 AATAAATTAAATG
1 AATAAATTAAATG
13097 AATAAATTAAAT
1 AATAAATTAAAT
13109 ACAATTAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (13 bp):
AATAAATTAAATG
Found at i:13108 original size:18 final size:18
Alignment explanation
Indices: 13061--13108 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
13051 ATAATGTCAA
* * *
13061 AATAAATAAAAATACATG
1 AATAAATTAAATTAAATG
*
13079 AATAAAATAAATTAAATG
1 AATAAATTAAATTAAATG
13097 AATAAATTAAAT
1 AATAAATTAAAT
13109 ACAATTAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (18 bp):
AATAAATTAAATTAAATG
Found at i:13118 original size:18 final size:18
Alignment explanation
Indices: 13070--13136 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
13060 AAATAAATAA
13070 AAATAC-ATGAATAAAAT
1 AAATACAATGAATAAAAT
*
13087 AAATTA-AATGAATAAATT
1 AAA-TACAATGAATAAAAT
* *
13105 AAATACAATTAATAACA-
1 AAATACAATGAATAAAAT
*
13122 AAATAAAAT-AATAAA
1 AAATACAATGAATAAA
13137 TAGGAGTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
16 5 0.12
17 13 0.32
18 23 0.56
ACGTcount: A:0.67, C:0.04, G:0.03, T:0.25
Consensus pattern (18 bp):
AAATACAATGAATAAAAT
Found at i:13331 original size:20 final size:21
Alignment explanation
Indices: 13294--13335 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
13284 TTTCAAAGCA
13294 AAAAATATCATATAAATAAAT
1 AAAAATATCATATAAATAAAT
*
13315 AAAAATATCA-ATGAATAAAT
1 AAAAATATCATATAAATAAAT
13335 A
1 A
13336 TATGAAATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (21 bp):
AAAAATATCATATAAATAAAT
Found at i:13562 original size:15 final size:15
Alignment explanation
Indices: 13541--13578 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
13531 ATTAGGCATG
*
13541 AAAATAAAT-GACAA
1 AAAATAAATAAACAA
13555 ATAAATAAATAAACAA
1 A-AAATAAATAAACAA
13571 AAAATAAA
1 AAAATAAA
13579 CAACTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 15 0.71
16 5 0.24
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.16
Consensus pattern (15 bp):
AAAATAAATAAACAA
Found at i:13821 original size:27 final size:27
Alignment explanation
Indices: 13785--13865 Score: 82
Period size: 25 Copynumber: 3.1 Consensus size: 27
13775 GCTTAGAATT
13785 TTCTTTGAATGTATGTCTCAAAAAAAA
1 TTCTTTGAATGTATGTCTCAAAAAAAA
*
13812 TTCTTTGAATGT-TGTAT-ATAAAAAAA
1 TTCTTTGAATGTATGTCTCA-AAAAAAA
* *
13838 -TCTCTGAATCTTAT-TC-CAAAAAAAA
1 TTCTTTGAAT-GTATGTCTCAAAAAAAA
13863 TTC
1 TTC
13866 CTCTCTGAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
25 16 0.36
26 16 0.36
27 13 0.29
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (27 bp):
TTCTTTGAATGTATGTCTCAAAAAAAA
Found at i:14493 original size:43 final size:43
Alignment explanation
Indices: 14269--15106 Score: 782
Period size: 43 Copynumber: 19.1 Consensus size: 43
14259 GGTGTTGTAA
* * * *
14269 CTTCAATCTATCCCTCTAGATTAGGGGTAAGAGATTGGATGATGA
1 CTTCAATCT-GCCCTCTAGATTA-GGGTAAAAGATTGGATGGTGG
* * * * * *
14314 CTTCAATCTACCCTTTTGGATTAGTCGTAAGAGATTGGATGATGG
1 CTTCAATCTGCCC-TCTAGATTAG-GGTAAAAGATTGGATGGTGG
* * * * * * *
14359 GTTTAATCTGCCCCTTTGGATTGGGGGTAAGAGATTGGACT-ATGG
1 CTTCAATCTG-CCCTCTAGATT-AGGGTAAAAGATTGGA-TGGTGG
* * * * *
14404 CTTCAATCTGCCTATCTGGATTGGGGGTAAGAGATTGGATGATGG
1 CTTCAATCTGCC-CTCTAGATT-AGGGTAAAAGATTGGATGGTGG
* * *
14449 CTTCAATCTGCTCTCTAGATTAGGGTAAAAGATTGGTTTGTGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGG
* * * *
14492 CTTTAATCTACCCCTCTAGATTAGGAGTAAAAGATTAGATGGTTG
1 CTTCAATCT-GCCCTCTAGATTAGG-GTAAAAGATTGGATGGTGG
* * * * *
14537 CTTTAATCAGCCCTTTAGATTAGGGTAAAAGATTAGTTGGTGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGG
* * * *
14580 CTTTAATCTGCCTCTCT-GATTTAAGGGTAAAAGATTGAATAGTTG
1 CTTCAATCTGCC-CTCTAGA-TT-AGGGTAAAAGATTGGATGGTGG
* * * * *
14625 CTTCAATTTTCCCTTTGGATTAAGGTAAAAGATTGGATGGTGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGG
* * * * *
14668 CTTCAATCTGCCCTCTGGATTAGGGTAAAAGATTAGTTAGTTG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGG
* * *
14711 CTTCAATATACCCTCTAGATTAGAGTAAAAGATTGGATGGTGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGG
** * *
14754 CTTCAATCTATCCTCTGGATTAGGGTAAAAGATTGGTTGGTGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGG
* *
14797 CTTCAATTTGCCCTTCTAGATTAGGGGTAAAAGATTGGATGGTTG
1 CTTCAATCTGCCC-TCTAGATTA-GGGTAAAAGATTGGATGGTGG
* **
14842 CTTCAGTCTATCCTCTAGATTAGGGTAAAAGATTGGATGGTGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGG
* * *
14885 CTTCAATCTACCCTCTAGATTAGGTTAAAAGATTGGTTGGTGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGG
* * *
14928 CTTTAATCTACCCTCTAGATTAGGGTAAAAGATTAGATGGTGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGG
* * * * *
14971 CTTCGATCTGCCCT-TTGAAATAGGGTAAAAGATTAGTTGGTGG
1 CTTCAATCTGCCCTCTAG-ATTAGGGTAAAAGATTGGATGGTGG
* * * * *
15014 CTTCAATTTATCCCTTTGGATTAGGGGTAAAAGATTGGATGGTTG
1 CTTCAATCT-GCCCTCTAGATTA-GGGTAAAAGATTGGATGGTGG
* *
15059 CTTCAATCTGCCCTCTAGATTATGGTAAAAGAATGGATGGTGG
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGG
15102 CTTCA
1 CTTCA
15107 CTCCATTCCA
Statistics
Matches: 664, Mismatches: 110, Indels: 40
0.82 0.14 0.05
Matches are distributed among these distances:
42 2 0.00
43 353 0.53
44 84 0.13
45 220 0.33
46 5 0.01
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (43 bp):
CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGG
Found at i:14527 original size:88 final size:87
Alignment explanation
Indices: 14269--15106 Score: 808
Period size: 88 Copynumber: 9.6 Consensus size: 87
14259 GGTGTTGTAA
* * * * * *
14269 CTTCAATCTATCCCTCTAGATTAGGGGTAAGAGATTGGATGATGACTTCAATCTACCCTTTTGGA
1 CTTCAATCT-GCCCTCTAGATTA-GGGTAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTGGA
* * *
14334 TTAGTCGTAAGAGATTGGATGATGG
64 TTAG-GGTAAAAGATTGGATGGTGG
* * * * * * * * **
14359 GTTTAATCTGCCCCTTTGGATTGGGGGTAAGAGATTGGACT-ATGGCTTCAATCTGCCTATCTGG
1 CTTCAATCTG-CCCTCTAGATT-AGGGTAAAAGATTGGA-TGGTGGCTTCAATCTACCCCTCTGG
* * *
14423 ATTGGGGGTAAGAGATTGGATGATGG
63 ATT-AGGGTAAAAGATTGGATGGTGG
* * * * *
14449 CTTCAATCTGCTCTCTAGATTAGGGTAAAAGATTGGTTTGTGGCTTTAATCTACCCCTCTAGATT
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTGGATT
* *
14514 AGGAGTAAAAGATTAGATGGTTG
66 AGG-GTAAAAGATTGGATGGTGG
* * * * * * * *
14537 CTTTAATCAGCCCTTTAGATTAGGGTAAAAGATTAGTTGGTGGCTTTAATCTGCCTCTCT-GATT
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTGGA-T
* * *
14601 TAAGGGTAAAAGATTGAATAGTTG
65 T-AGGGTAAAAGATTGGATGGTGG
* * * * * *
14625 CTTCAATTTTCCCTTTGGATTAAGGTAAAAGATTGGATGGTGGCTTCAATCT-GCCCTCTGGATT
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTGGATT
* * * *
14689 AGGGTAAAAGATTAGTTAGTTG
66 AGGGTAAAAGATTGGATGGTGG
* * * *
14711 CTTCAATATACCCTCTAGATTAGAGTAAAAGATTGGATGGTGGCTTCAATCTA-TCCTCTGGATT
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTGGATT
*
14775 AGGGTAAAAGATTGGTTGGTGG
66 AGGGTAAAAGATTGGATGGTGG
* * * * *
14797 CTTCAATTTGCCCTTCTAGATTAGGGGTAAAAGATTGGATGGTTGCTTCAGTCTA-TCCTCTAGA
1 CTTCAATCTGCCC-TCTAGATTA-GGGTAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTGGA
14861 TTAGGGTAAAAGATTGGATGGTGG
64 TTAGGGTAAAAGATTGGATGGTGG
* * * * *
14885 CTTCAATCTACCCTCTAGATTAGGTTAAAAGATTGGTTGGTGGCTTTAATCTA-CCCTCTAGATT
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTGGATT
*
14949 AGGGTAAAAGATTAGATGGTGG
66 AGGGTAAAAGATTGGATGGTGG
* * * * * * * *
14971 CTTCGATCTGCCCT-TTGAAATAGGGTAAAAGATTAGTTGGTGGCTTCAATTTATCCCTTTGGAT
1 CTTCAATCTGCCCTCTAG-ATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTGGAT
*
15035 TAGGGGTAAAAGATTGGATGGTTG
65 TA-GGGTAAAAGATTGGATGGTGG
* *
15059 CTTCAATCTGCCCTCTAGATTATGGTAAAAGAATGGATGGTGGCTTCA
1 CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGGCTTCA
15107 CTCCATTCCA
Statistics
Matches: 630, Mismatches: 102, Indels: 34
0.82 0.13 0.04
Matches are distributed among these distances:
85 2 0.00
86 204 0.32
87 40 0.06
88 290 0.46
89 13 0.02
90 79 0.13
91 2 0.00
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (87 bp):
CTTCAATCTGCCCTCTAGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTACCCCTCTGGATT
AGGGTAAAAGATTGGATGGTGG
Found at i:14744 original size:174 final size:172
Alignment explanation
Indices: 14384--15104 Score: 727
Period size: 174 Copynumber: 4.1 Consensus size: 172
14374 TTGGATTGGG
* * * * * * * * *
14384 GGTAAGAGATTGGACT-ATGGCTTCAATCTGCCTATCTGGATTGGGGGTAAGAGATTGGATGATG
1 GGTAAAAGATTGGA-TGGTGGCTTTAATCTACCTCTCT-GATT-AGGGTAAAAGATTGAATGGTG
* * * * * * * *
14448 GCTTCAATCTGCTCTCTAGATTAGGGTAAAAGATTGGTTTGTGGCTTTAATCTACCCCTCTAGAT
63 GCTTCAATTTGCCCTTTGGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTAACCCTCTAGAT
* * *
14513 TAGGAGTAAAAGATTAGATGGTTGCTTTAATCA-GCCCTTTAGATTA
128 TAGG-GTAAAAGATTAGATGGTTGCTTCAAT-ATACCCTCTAGATTA
* * * * *
14559 GGGTAAAAGATTAGTTGGTGGCTTTAATCTGCCTCTCTGATTTAAGGGTAAAAGATTGAATAGTT
1 -GGTAAAAGATTGGATGGTGGCTTTAATCTACCTCTCTGA-TT-AGGGTAAAAGATTGAATGGTG
* * * *
14624 GCTTCAATTTTCCCTTTGGATTAAGGTAAAAGATTGGATGGTGGCTTCAATCT-GCCCTCTGGAT
63 GCTTCAATTTGCCCTTTGGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTAACCCTCTAGAT
* *
14688 TAGGGTAAAAGATTAGTTAGTTGCTTCAATATACCCTCTAGATTA
128 TAGGGTAAAAGATTAGATGGTTGCTTCAATATACCCTCTAGATTA
* * **
14733 GAGTAAAAGATTGGATGGTGGCTTCAATCTATCCTCT-GGATTAGGGTAAAAGATTGGTTGGTGG
1 G-GTAAAAGATTGGATGGTGGCTTTAATCTA-CCTCTCTGATTAGGGTAAAAGATTGAATGGTGG
* * * *
14797 CTTCAATTTGCCCTTCTAGATTAGGGGTAAAAGATTGGATGGTTGCTTCAGTCT-ATCCTCTAGA
64 CTTCAATTTGCCCTT-TGGATTA-GGGTAAAAGATTGGATGGTGGCTTCAATCTAACCCTCTAGA
* * *
14861 TTAGGGTAAAAGATTGGATGGTGGCTTCAATCTACCCTCTAGATTA
127 TTAGGGTAAAAGATTAGATGGTTGCTTCAATATACCCTCTAGATTA
*
14907 GGTTAAAAGATTGGTTGGTGGCTTTAATCTACC-CTCTAGATTAGGGTAAAAGATT-AGATGGTG
1 GG-TAAAAGATTGGATGGTGGCTTTAATCTACCTCTCT-GATTAGGGTAAAAGATTGA-ATGGTG
* * * * * * * * * *
14970 GCTTCGATCTGCCCTTTGAAATAGGGTAAAAGATTAGTTGGTGGCTTCAATTTATCCCTTTGGAT
63 GCTTCAATTTGCCCTTTGGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTAACCCTCTAGAT
* * *
15035 TAGGGGTAAAAGATTGGATGGTTGCTTCAATCTGCCCTCTAGATTA
128 TA-GGGTAAAAGATTAGATGGTTGCTTCAATATACCCTCTAGATTA
*
15081 TGGTAAAAGAATGGATGGTGGCTT
1 -GGTAAAAGATTGGATGGTGGCTT
15105 CACTCCATTC
Statistics
Matches: 457, Mismatches: 74, Indels: 30
0.81 0.13 0.05
Matches are distributed among these distances:
172 59 0.13
173 26 0.06
174 259 0.57
175 23 0.05
176 90 0.20
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (172 bp):
GGTAAAAGATTGGATGGTGGCTTTAATCTACCTCTCTGATTAGGGTAAAAGATTGAATGGTGGCT
TCAATTTGCCCTTTGGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTAACCCTCTAGATTAG
GGTAAAAGATTAGATGGTTGCTTCAATATACCCTCTAGATTA
Found at i:14827 original size:217 final size:218
Alignment explanation
Indices: 14269--15106 Score: 918
Period size: 217 Copynumber: 3.8 Consensus size: 218
14259 GGTGTTGTAA
* * * * * *
14269 CTTCAATCTATCCCTCTAGATTAGGGGTAAGAGATTGGATGATGACTTCAATCTACCCTTTTGGA
1 CTTCAATCTACCCCTCTAGATTAGGAGTAAAAGATTAGATGGTGGCTTCAATCTACCC-TTTGGA
* * * * * * * * * *
14334 TTAGTCGTAAGAGATTGGATGATGGGTTTAATCTGCCCCTTTGGATTGGGGGTAAGAGATTGGAC
65 TTAG-GGTAAAAGATTAGTTGGTGGCTTCAATCTG-CCCTTTGGATTAGGGGTAAAAGATT-GAA
* * * * * * * * *
14399 TA-TGGCTTCAATCTGCCTATCTGGATTGGGGGTAAGAGATTGGATGATGGCTTCAATCTGCTCT
127 TAGTTGCTTCAATTTTCC-CTCTAGATT-AGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCT
*
14463 CTAGATTAGGGTAAAAGATTGGTTTGTGG
190 CTAGATTAGGGTAAAAGATTGGTTAGTGG
* * * *
14492 CTTTAATCTACCCCTCTAGATTAGGAGTAAAAGATTAGATGGTTGCTTTAATC-AGCCCTTTAGA
1 CTTCAATCTACCCCTCTAGATTAGGAGTAAAAGATTAGATGGTGGCTTCAATCTA-CCCTTTGGA
* * *
14556 TTAGGGTAAAAGATTAGTTGGTGGCTTTAATCTGCCTCTCT-GATTTAAGGGTAAAAGATTGAAT
65 TTAGGGTAAAAGATTAGTTGGTGGCTTCAATCTGCC-CTTTGGA-TTAGGGGTAAAAGATTGAAT
* * * *
14620 AGTTGCTTCAATTTTCCCTTTGGATTAAGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCTCTG
128 AGTTGCTTCAATTTTCCCTCTAGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCTCTA
* *
14685 GATTAGGGTAAAAGATTAGTTAGTTG
193 GATTAGGGTAAAAGATTGGTTAGTGG
* * * *
14711 CTTCAATATA-CCCTCTAGATTA-GAGTAAAAGATTGGATGGTGGCTTCAATCTATCCTCTGGAT
1 CTTCAATCTACCCCTCTAGATTAGGAGTAAAAGATTAGATGGTGGCTTCAATCTACCCTTTGGAT
* * * * *
14774 TAGGGTAAAAGATTGGTTGGTGGCTTCAATTTGCCCTTCTAGATTAGGGGTAAAAGATTGGATGG
66 TAGGGTAAAAGATTAGTTGGTGGCTTCAATCTGCCCTT-TGGATTAGGGGTAAAAGATTGAATAG
* * *
14839 TTGCTTCAGTCTAT-CCTCTAGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTACCCTCTAG
130 TTGCTTCAAT-TTTCCCTCTAGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCTCTAG
* *
14903 ATTAGGTTAAAAGATTGGTTGGTGG
194 ATTAGGGTAAAAGATTGGTTAGTGG
* * * * *
14928 CTTTAATCTA-CCCTCTAGATTAGG-GTAAAAGATTAGATGGTGGCTTCGATCTGCCCTTTGAAA
1 CTTCAATCTACCCCTCTAGATTAGGAGTAAAAGATTAGATGGTGGCTTCAATCTACCCTTTGGAT
* * * *
14991 TAGGGTAAAAGATTAGTTGGTGGCTTCAATTTATCCCTTTGGATTAGGGGTAAAAGATTGGATGG
66 TAGGGTAAAAGATTAGTTGGTGGCTTCAATCT-GCCCTTTGGATTAGGGGTAAAAGATTGAATAG
* * * *
15056 TTGCTTCAATCTGCCCTCTAGATTATGGTAAAAGAATGGATGGTGGCTTCA
130 TTGCTTCAATTTTCCCTCTAGATTAGGGTAAAAGATTGGATGGTGGCTTCA
15107 CTCCATTCCA
Statistics
Matches: 525, Mismatches: 79, Indels: 28
0.83 0.12 0.04
Matches are distributed among these distances:
216 2 0.00
217 312 0.59
218 23 0.04
219 64 0.12
220 15 0.03
221 52 0.10
222 10 0.02
223 47 0.09
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (218 bp):
CTTCAATCTACCCCTCTAGATTAGGAGTAAAAGATTAGATGGTGGCTTCAATCTACCCTTTGGAT
TAGGGTAAAAGATTAGTTGGTGGCTTCAATCTGCCCTTTGGATTAGGGGTAAAAGATTGAATAGT
TGCTTCAATTTTCCCTCTAGATTAGGGTAAAAGATTGGATGGTGGCTTCAATCTGCCCTCTAGAT
TAGGGTAAAAGATTGGTTAGTGG
Found at i:16116 original size:1 final size:1
Alignment explanation
Indices: 16110--16200 Score: 56
Period size: 1 Copynumber: 91.0 Consensus size: 1
16100 TTGGCCCCTC
* * * * * * * * * *
16110 TTTTTTTTCTCTTTTCTTTTTTTCTTTTTTCTTTTTTCTTTTTTTTTTCTTTCTTTTTCTTTTTC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
16175 TTTTTCTTTTTCTTTTCTTTTCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
16201 CTTTGCTAGT
Statistics
Matches: 62, Mismatches: 28, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 62 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (1 bp):
T
Found at i:16126 original size:7 final size:6
Alignment explanation
Indices: 16108--16204 Score: 100
Period size: 6 Copynumber: 16.8 Consensus size: 6
16098 TCTTGGCCCC
* *
16108 TCTTTT T-TTTC TCTTTT CTTTTTT TCTTTTT TCTTTTT TCTTTT T-TTTT
1 TCTTTT TCTTTT TCTTTT -TCTTTT TC-TTTT TC-TTTT TCTTTT TCTTTT
16157 TC--TT TCTTTT TCTTTT TCTTTT TCTTTT TC-TTT TC-TTT TC-TTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
16200 TCTTT
1 TCTTT
16205 GCTAGTTTGA
Statistics
Matches: 80, Mismatches: 4, Indels: 14
0.82 0.04 0.14
Matches are distributed among these distances:
4 4 0.05
5 24 0.30
6 34 0.43
7 18 0.22
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TCTTTT
Found at i:16137 original size:22 final size:22
Alignment explanation
Indices: 16110--16204 Score: 117
Period size: 22 Copynumber: 4.4 Consensus size: 22
16100 TTGGCCCCTC
16110 TTTTT-TTTCTCTTTTCTTTTT
1 TTTTTCTTTCTCTTTTCTTTTT
*
16131 TTCTTT-TTTCTTTTTTCTTTTT
1 TT-TTTCTTTCTCTTTTCTTTTT
16153 TTTTTCTTTCT-TTTTCTTTTT
1 TTTTTCTTTCTCTTTTCTTTTT
*
16174 CTTTTTCTTTTTCTTTTC-TTTT
1 -TTTTTCTTTCTCTTTTCTTTTT
*
16196 CTTTTCTTT
1 TTTTTCTTT
16205 GCTAGTTTGA
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
21 23 0.34
22 39 0.58
23 5 0.07
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTTTCTTTCTCTTTTCTTTTT
Found at i:16157 original size:28 final size:29
Alignment explanation
Indices: 16112--16200 Score: 114
Period size: 28 Copynumber: 3.1 Consensus size: 29
16102 GGCCCCTCTT
*
16112 TTTTTTCTCTTTTCTTTT-TTTCTTTTTTC
1 TTTTTTCT-TTTTTTTTTCTTTCTTTTTTC
16141 TTTTTTCTTTTTTTTTTCTTTC-TTTTTC
1 TTTTTTCTTTTTTTTTTCTTTCTTTTTTC
*
16169 -TTTTTCTTTTTCTTTTTCTTT-TCTTTTC
1 TTTTTTCTTTTT-TTTTTCTTTCTTTTTTC
16197 TTTT
1 TTTT
16201 CTTTGCTAGT
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
27 11 0.20
28 28 0.52
29 15 0.28
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (29 bp):
TTTTTTCTTTTTTTTTTCTTTCTTTTTTC
Found at i:16179 original size:33 final size:34
Alignment explanation
Indices: 16108--16204 Score: 117
Period size: 33 Copynumber: 2.8 Consensus size: 34
16098 TCTTGGCCCC
*
16108 TCTTTTTTTTCTCTTTTCTTTTTTTCTTTTTTCTTTTT
1 TCTTTTTTTTTTC-TTTC--TTTTTC-TTTTTCTTTTT
16146 TCTTTTTTTTTTCTTTCTTTTTCTTTTTC-TTTT
1 TCTTTTTTTTTTCTTTCTTTTTCTTTTTCTTTTT
*
16179 TCTTTTTCTTTTCTTT-TCTTTTCTTT
1 TCTTTTTTTTTTCTTTCT-TTTTCTTT
16205 GCTAGTTTGA
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
32 1 0.02
33 27 0.48
34 6 0.11
35 6 0.11
37 4 0.07
38 12 0.21
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (34 bp):
TCTTTTTTTTTTCTTTCTTTTTCTTTTTCTTTTT
Found at i:16202 original size:15 final size:14
Alignment explanation
Indices: 16111--16204 Score: 84
Period size: 14 Copynumber: 6.2 Consensus size: 14
16101 TGGCCCCTCT
16111 TTTTTTTCTCTTTTC
1 TTTTTTT-TCTTTTC
16126 -TTTTTTTCTTTT-
1 TTTTTTTTCTTTTC
*
16138 TTCTTTTTTCTTTTT
1 TT-TTTTTTCTTTTC
16153 TTTTTCTTTCTTTTTC
1 TTTTT-TTTC-TTTTC
16169 TTTTTCTTTTTCTTTTTC
1 --TTT-TTTTTC-TTTTC
16187 TTTTCTTTTCTTTTC
1 TTTT-TTTTCTTTTC
16202 TTT
1 TTT
16205 GCTAGTTTGA
Statistics
Matches: 69, Mismatches: 1, Indels: 18
0.78 0.01 0.20
Matches are distributed among these distances:
13 7 0.10
14 20 0.29
15 15 0.22
16 12 0.17
18 13 0.19
19 2 0.03
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTTTCTTTTC
Found at i:25145 original size:6 final size:6
Alignment explanation
Indices: 25134--25193 Score: 52
Period size: 6 Copynumber: 9.3 Consensus size: 6
25124 ATAAATAAAC
25134 AAAAAT AAAAAT AAAAAT -AAAAT GATAAAAT AAACAA- ACAAATAT AAACAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT -A-AAAAT AAA-AAT A-AAA-AT AAA-AAT
25186 AAAAAT AA
1 AAAAAT AA
25194 TTAGGATCAG
Statistics
Matches: 46, Mismatches: 0, Indels: 16
0.74 0.00 0.26
Matches are distributed among these distances:
5 5 0.11
6 21 0.46
7 13 0.28
8 7 0.15
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:25163 original size:26 final size:26
Alignment explanation
Indices: 25048--25193 Score: 79
Period size: 26 Copynumber: 5.5 Consensus size: 26
25038 CAAACAAGAT
* *
25048 AATAACAATAAATAAAAAT-TAAATAA
1 AATAATAA-AAATAAAAATAAAAATAA
* * * *
25074 AATAATAATAAGAAAGATAACAATAA
1 AATAATAAAAATAAAAATAAAAATAA
*
25100 AATGACATGAAAAT--AAATAACAAGAT-A
1 AAT-A-ATAAAAATAAAAATAA-AA-ATAA
*
25127 AATAAACAAAAATAAAAATAAAAATAA
1 AAT-AATAAAAATAAAAATAAAAATAA
* *
25154 AATGAT-AAAATAAACAA-ACAAATATA
1 AATAATAAAAATAAA-AATAAAAATA-A
*
25180 AACAATAAAAATAA
1 AATAATAAAAATAA
25194 TTAGGATCAG
Statistics
Matches: 90, Mismatches: 19, Indels: 21
0.69 0.15 0.16
Matches are distributed among these distances:
25 21 0.23
26 36 0.40
27 20 0.22
28 13 0.14
ACGTcount: A:0.72, C:0.05, G:0.04, T:0.18
Consensus pattern (26 bp):
AATAATAAAAATAAAAATAAAAATAA
Found at i:25234 original size:19 final size:19
Alignment explanation
Indices: 25210--25267 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
25200 TCAGGTGTGG
25210 AAATAAATGACAAATAAAT
1 AAATAAATGACAAATAAAT
** * *
25229 AAATAAACAAAAAATCAAT
1 AAATAAATGACAAATAAAT
*
25248 AAATTAAATGTCAAAATAAA
1 AAA-TAAATGAC-AAATAAA
25268 CAACTAAAAA
Statistics
Matches: 28, Mismatches: 9, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
19 18 0.64
20 4 0.14
21 6 0.21
ACGTcount: A:0.69, C:0.07, G:0.03, T:0.21
Consensus pattern (19 bp):
AAATAAATGACAAATAAAT
Found at i:25243 original size:15 final size:16
Alignment explanation
Indices: 25210--25250 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
25200 TCAGGTGTGG
*
25210 AAATAAAT-GACAAAT
1 AAATAAATAAACAAAT
25225 AAATAAATAAACAAA-
1 AAATAAATAAACAAAT
*
25240 AAATCAATAAA
1 AAATAAATAAA
25251 TTAAATGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.73, C:0.07, G:0.02, T:0.17
Consensus pattern (16 bp):
AAATAAATAAACAAAT
Found at i:26062 original size:13 final size:13
Alignment explanation
Indices: 26044--26068 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26034 GAAATTAAGG
26044 GTATCATATGAGA
1 GTATCATATGAGA
26057 GTATCATATGAG
1 GTATCATATGAG
26069 GGTAACACAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (13 bp):
GTATCATATGAGA
Found at i:26593 original size:37 final size:37
Alignment explanation
Indices: 26552--26623 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
26542 CAAAAATACT
26552 ATTATTTTAATAAT-TTAATATTAAATTTAAT-TTAATA
1 ATTATTTTAATAATATT-ATATT-AATTTAATATTAATA
* *
26589 ATTATTTTGATAGTATTATATTAATTTAATATTAA
1 ATTATTTTAATAATATTATATTAATTTAATATTAA
26624 AGTGATTATC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 8 0.26
37 21 0.68
38 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (37 bp):
ATTATTTTAATAATATTATATTAATTTAATATTAATA
Found at i:26674 original size:29 final size:32
Alignment explanation
Indices: 26611--26674 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 32
26601 GTATTATATT
*
26611 AATTTAATATTAAAGTGATTATCTTAATATCA
1 AATTTAATATTAAAGTGATTATCTTAAGATCA
*
26643 AATTTAA-ATT-AA-TGTTTATCTTATAGAT-A
1 AATTTAATATTAAAGTGATTATCTTA-AGATCA
26672 AAT
1 AAT
26675 ACTTATGAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
29 14 0.48
30 5 0.17
31 3 0.10
32 7 0.24
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.45
Consensus pattern (32 bp):
AATTTAATATTAAAGTGATTATCTTAAGATCA
Found at i:32435 original size:23 final size:22
Alignment explanation
Indices: 32409--32466 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
32399 AGTTCGGGTT
*
32409 GGGTTCGATCAATGGGTCGAGTC
1 GGGTTCGATCAATGGATC-AGTC
* *
32432 GGGTTCGATCAACGGATCTGTC
1 GGGTTCGATCAATGGATCAGTC
*
32454 GAGTTCGATCAAT
1 GGGTTCGATCAAT
32467 AGGTTGGGTC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 14 0.47
23 16 0.53
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.28
Consensus pattern (22 bp):
GGGTTCGATCAATGGATCAGTC
Found at i:32459 original size:22 final size:23
Alignment explanation
Indices: 32411--32465 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
32401 TTCGGGTTGG
* * *
32411 GTTCGATCAATGGGTCGAGTCGG
1 GTTCGATCAACGGATCGAGTCGA
*
32434 GTTCGATCAACGGATC-TGTCGA
1 GTTCGATCAACGGATCGAGTCGA
32456 GTTCGATCAA
1 GTTCGATCAA
32466 TAGGTTGGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (23 bp):
GTTCGATCAACGGATCGAGTCGA
Found at i:38866 original size:155 final size:153
Alignment explanation
Indices: 38364--38888 Score: 776
Period size: 154 Copynumber: 3.4 Consensus size: 153
38354 TGATTAAACA
*
38364 AAAATCACTACTTTACTTAAAAATCCAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAACTTT
1 AAAATCACTATTTTACTTAAAAATCCAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAACTTT
** **
38429 GTTAAAAGTTTAAACTTTTTCTTTAAAATAACTAAAAAACAGATTTTT-TTTTTTTTAAATCTAA
66 GTTAAAAAATTAAACTTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTTAAAAATCTAA
*
38493 ACTTTCTTTTTTTTTTTTTTTAAAG
131 ACTTTC--TTTTTTTTTTTTAAAAG
*
38518 AAAATCACTATTTTACTTAAAAATCGAAACTTTTATTTCGAAATAGTTAAAAAAAATCAAAACTT
1 AAAATCACTATTTTACTTAAAAATCCAAACTTTTATTTCGAAATAGTT-AAAAAAATCAAAACTT
* *
38583 TG-TCAAAAATT-TACTTTTTCTTTAAAATAACTAAAAAACAGA-TTTTATTTTTTAAAAACTCT
65 TGTTAAAAAATTAAACTTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTTAAAAA-TCT
38645 AAACTTTCTTCTTCTTTTTTTTAAAAG
129 AAACTTTCTT-TT-TTTTTTTTAAAAG
*
38672 AAAATCACTATTTTGCTTAAAAATCCAAACTTTTATTTCGAAATAGTTAGAAAAAATCAAAACTT
1 AAAATCACTATTTTACTTAAAAATCCAAACTTTTATTTCGAAATAGTTA-AAAAAATCAAAACTT
*
38737 TGTTAAAAAATTAAAATTTTTCTTTAAAATAACT-AAAAACAGATTTTTATTTTTTAAAAATCTA
65 TGTTAAAAAATTAAACTTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTTAAAAATCTA
*
38801 AATTTTCTGTTTTTTTTTTTAAAAG
130 AACTTTCT-TTTTTTTTTTTAAAAG
* *
38826 AAAATCACTATTTTGCTTAAAAAAT-CAAAGCTTTTATTTCGAAATTGTTTAAAAAAA-CAAAAC
1 AAAATCACTATTTTACTT-AAAAATCCAAA-CTTTTATTTCGAAATAG-TTAAAAAAATCAAAAC
38889 ATTTCCCAAA
Statistics
Matches: 342, Mismatches: 16, Indels: 26
0.89 0.04 0.07
Matches are distributed among these distances:
152 6 0.02
153 42 0.12
154 179 0.52
155 76 0.22
156 39 0.11
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (153 bp):
AAAATCACTATTTTACTTAAAAATCCAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAACTTT
GTTAAAAAATTAAACTTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTTAAAAATCTAA
ACTTTCTTTTTTTTTTTTAAAAG
Done.